Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2087 ATGTGGTTTTCTTTCTGGAGATCCCGAGATCGCTTTTCCTTGGATCACCTCAGGTACTTAACTGATCAATTGACAAAAATTCAAGTAGTTAACGAGGTTAATAAGGATTTTGTTATCGAGGCACTAAGGTCAATTGCAGAGTTGATAACATATGGCGACCAACATGACACAAGCTATTTTGAATTCTTCATGGAAAAACAAGTCGTGGGGGAGTTTGTACGTATTTTAAAACTTAGCAGGACTATTAGCATTCCACTTCAGCTGCTTCAAACAGTGGGCATTATGATCCAGAACCTAGAAAGTGAGCATGCTATATATTATATGTTTAGTAATGAACATATGAATTACCTAATTACACATTCATTCGACTTTCGCAACGAAGAGCTATTGTCATACTACATATCCTTTTTAAGAGCAATAAGCGGAAAATTGAACAAGAATACTATTTCTCTGCTTGTGAAGACTTGTAATGATGAAGTAGTTTCATTTCCACTGTATGTTGAGGCGATACGATTCGCCTTTCATGAAGAGAGCATGGTGCGCACTGCTGTACGAGCTGTGACCCTTAATGTTTACCATGTTGGAGATGATTCTGTTAATAGATACATAACCAGTGCACCTCACACAGATTACTTCTCAAACCTGGTTTCCTTTTTTAGAAAGCAGTGCATCAATTTAAATAAACTGGTCTACGAGACTCTGAAAAATCCAGTCCCAGATTCAACCTCTACAATTATTTCTGCCGTAGATGAAATCGAAGATAACCTGTATTACTTCAGTGATGTCATCTCTGCTGGAATCCCTGATGTTGGGAGGCTAATAACAGACAGCATTCTGATGCTTCTGATTTTTCCAATACTTCTTCCTTCCCTAAGGATAGTGGCTTTTAATGACATGCAAAGTGGTGTTGTCACTTCTCTCTACTTACTTTGCTGCATCTTGAAGATAGTGAAGATCAAAGATTTGGCAAATACCGTAGTTGCCGCTCTTATTTATCCCTTAAAGTCCTTTACAAAATGTTCTGGGGGTAACATTAATGGCTATGCATCTGAAAGCCAAGGGCAAGAGGATGATAATCTTGACAAGTGTTGTTCTTCAGGTTTTCATCCACAAAGTCTTATCACGCGAAATAATTGTAGCAGTTCGAATATGGCTTTAAGGGAAGTTTTGCTTGCATATGTTACTAACGGGGATGATTTACAAGTTTTGGGTTCTTTGAGTTTGCTTGCCACTCTGCTGCAAACTAAAGAACTTGATGAATCAATGCTAGATGGGCTTGGGATTCTTCCACAACGCAAACAGCACAAGAAACTCTTATTGCAAGCTCTGGTTGGTGAGGCTTCAGGTGAAGAGCAACTTTTTTCTTCTGAAAGTAGCTTGATGAGGGATGACATTGGTTGCGAGTTTAATGTCTATCTCGAAAAGATCCAGGAGCAGTACGGAATATCTTTCCAGCCTTCTGGTGCGGGAACGAGCCCTCGTTTAGCTAGATTTCAGGTGCTCGATGCATTAGTGAGCCTCTTTTGTCGTTCTAATATATCTGCTGAGACATTGTGGAATGGTGGTTGGCTTTTGCGCCAGTTGCTTCCTTACAGTGAGGCAGAATTCAACCGCCATCACTTGGATTTGCTGAAAGTTTCATACAAGAACTCTGCTTCTGCTCTTGAAAAGGAGGTTAAAGGTTTCTGGCCAGATGTTCTTATTACTGTTCTTTGTGATGAGTGGAGAAAGTGCAAAAGAGCAATGGAGTCTTCATGCCCTCCAAAAGAACCGAAGTGCATACTTTTTCCACCTCAAATGTTCTTTTCAGGAGAAGATATACCTGAGGGATCATCATTTGCTTCTGGAGAAAGAATGCATGAGTTGGTGAAGGTATTTGTACTACTACACCAACTTCAAATATTCACTCTAGGTAGAGCTTTGCCTGAGCAACCTTATATTTATCCTCCTGGTGATCTTCCTGCAAATTCTCGTGCCCAGACTTCTGGACTTGATCTGTCAGCCCCAAAGCCAGGCACTGAAATAAGCCTTGTTAATGCATTACCTTGTAGAATTGCTTTTGAGAGGGGAAAAGAGCGCCATTTTTCCTTTCTAGCGTTCTCTGTTGGAACATCTGGGTGGCTTGTGCTTGCAGAAGAATTGCCTTCGAAGAATTCCTATGGAGTTGTTCGGGTTGCTGCTCCGTTGGCAGGGTGCAATCCCAGGATTGATGATAAACATTCGAAGTGGTTACACCTGCGGATCCGACCATCCTCTTTACCTTTTCTAGATCCTGCCAAGTCCAATACGTATGGGAAATTAAAGACAAAAGCTTTTATTGACGGACGATGGACGTTGGCGTTCAGGAATGAGGAGTCTTGCAAGTCTGCGTTACTCATGATTCATGAAGAGATTAATTTTCTAAGTGACGAGGTGCATAGAAGACTGAAACCTTTGCTCAACCTTGAAACCGCAGTAGATTTATCGAGCCCGTCTGTACGTGTTCCAAAGGATTCCTCTTTCCAATCAACACCTCCCAATTCATTGTAA 2529 0.4116 MWFSFWRSRDRFSLDHLRYLTDQLTKIQVVNEVNKDFVIEALRSIAELITYGDQHDTSYFEFFMEKQVVGEFVRILKLSRTISIPLQLLQTVGIMIQNLESEHAIYYMFSNEHMNYLITHSFDFRNEELLSYYISFLRAISGKLNKNTISLLVKTCNDEVVSFPLYVEAIRFAFHEESMVRTAVRAVTLNVYHVGDDSVNRYITSAPHTDYFSNLVSFFRKQCINLNKLVYETLKNPVPDSTSTIISAVDEIEDNLYYFSDVISAGIPDVGRLITDSILMLLIFPILLPSLRIVAFNDMQSGVVTSLYLLCCILKIVKIKDLANTVVAALIYPLKSFTKCSGGNINGYASESQGQEDDNLDKCCSSGFHPQSLITRNNCSSSNMALREVLLAYVTNGDDLQVLGSLSLLATLLQTKELDESMLDGLGILPQRKQHKKLLLQALVGEASGEEQLFSSESSLMRDDIGCEFNVYLEKIQEQYGISFQPSGAGTSPRLARFQVLDALVSLFCRSNISAETLWNGGWLLRQLLPYSEAEFNRHHLDLLKVSYKNSASALEKEVKGFWPDVLITVLCDEWRKCKRAMESSCPPKEPKCILFPPQMFFSGEDIPEGSSFASGERMHELVKVFVLLHQLQIFTLGRALPEQPYIYPPGDLPANSRAQTSGLDLSAPKPGTEISLVNALPCRIAFERGKERHFSFLAFSVGTSGWLVLAEELPSKNSYGVVRVAAPLAGCNPRIDDKHSKWLHLRIRPSSLPFLDPAKSNTYGKLKTKAFIDGRWTLAFRNEESCKSALLMIHEEINFLSDEVHRRLKPLLNLETAVDLSSPSVRVPKDSSFQSTPPNSL* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2087 842 PANTHER UNCHARACTERIZED 1 824 IPR039272 -
Lja6g2087 842 PANTHER PROTEIN TRANSPARENT TESTA 9 1 824 - -
Lja6g2087 842 Pfam Uncharacterised conserved protein 42 192 IPR019155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2087 Lja-Chr6 49399738 49410029 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2087 K19513 - gmx:100786267 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2087 6 49399738 49410029 Lja6g2087 6 49399738 49410029 ECH
Lja4g1607 4 15066886 15076740 Lja6g2087 6 49399738 49410029 PCT