Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2081 ATGATGGTGCAACAGTTTCATCATCAACATCAACTAACGGTGAAGATGGATACCATGTTGATGAGGAAGAAGGAGAAGGAGAAATCAGAGAAGAACAAAACCACCAACATGGAGAAAGAGAAGCTTCAATTTCAAATACTGGACTTGAGTTGCTTGTCCTTGAGCTCTCTTCCTAAACCTTCACTTGATTTAGCTACCATTAGCAAATTGGACCTGTCTAATAACAATCTTCAGGAAATACCGGAGTCGTTAACAGCGAGATTGCTGAACTTGGAGGAGTTGGACGTGCGCTCCAATCAACTCACATCTCTTCCCAACTCCATTGGCTGCCTCTCAAAGCTCAAGCTCTTGAATGTTTCTGGCAACTTCATTGAATCCCTCCCCAAAACCATTGAGAATTGCAGTGCCTTAGAAGAACTGAATGCCAATTTCAACAAGTTGAGCAAGCTGCCAGACACAATTGGGTTTGAGCTCATAAACCTCAAGAAGCTCGCAGTCAATTCCAACAAGTTGGTGCTCCTTCCAAGCTCTACCTCTCACCTAACAGCTCTAACGGTTCTCGACGCACGCCTGAACTGTCTCAGAGCTCTCCCCGAAAACCTTGAGAATCTCATCAACCTAGAGACCCTCAATGTGAGTCAGAACTTCCGGTACCTGGACACACTCCCCTACTCCATAGGGCTCCTCCTGTCCCTGGTTGAACTGGATGTTAGCTACAACAATATCAAGACCTTGCCTGACTCCATTGGGTGCCTCATGAAGCTCCAAAAGCTAAGTGTGGAAGGAAACCCACTTGTTTCACCTCCAATGGAAGTGGTGGAGCAGGGGCTACATGTGGTTAAGGAATTCATGTGCCATAAGATGAACTCAGAACATAAAATCCCAACCAAGAGGTCATGGATAAGGAAACTGGTTAAATTGGGGACCTTCAATGGATACGAGAGAAGAGGGAAACGATCAGAACACAAAGGTATCGACATGCTTCAGTATCAACCCATCAATGGTCTTGCTACACCAGGCTTCTTGGGGAAGTTTTCACCTCTTCGCCTATTCTCACCCCGCCGTTCCTTCAGTCGAGAAGCAACTGAATACTTCTGA 1098 0.4581 MMVQQFHHQHQLTVKMDTMLMRKKEKEKSEKNKTTNMEKEKLQFQILDLSCLSLSSLPKPSLDLATISKLDLSNNNLQEIPESLTARLLNLEELDVRSNQLTSLPNSIGCLSKLKLLNVSGNFIESLPKTIENCSALEELNANFNKLSKLPDTIGFELINLKKLAVNSNKLVLLPSSTSHLTALTVLDARLNCLRALPENLENLINLETLNVSQNFRYLDTLPYSIGLLLSLVELDVSYNNIKTLPDSIGCLMKLQKLSVEGNPLVSPPMEVVEQGLHVVKEFMCHKMNSEHKIPTKRSWIRKLVKLGTFNGYERRGKRSEHKGIDMLQYQPINGLATPGFLGKFSPLRLFSPRRSFSREATEYF* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2081 365 ProSiteProfiles Leucine-rich repeat profile. 231 252 IPR001611 GO:0005515
Lja6g2081 365 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 353 - -
Lja6g2081 365 SUPERFAMILY L domain-like 45 286 - -
Lja6g2081 365 SMART LRR_bac_2 181 200 - -
Lja6g2081 365 SMART LRR_bac_2 229 248 - -
Lja6g2081 365 SMART LRR_bac_2 134 153 - -
Lja6g2081 365 SMART LRR_bac_2 64 83 - -
Lja6g2081 365 SMART LRR_bac_2 88 107 - -
Lja6g2081 365 SMART LRR_bac_2 111 130 - -
Lja6g2081 365 SMART LRR_bac_2 158 177 - -
Lja6g2081 365 ProSiteProfiles Leucine-rich repeat profile. 66 87 IPR001611 GO:0005515
Lja6g2081 365 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 3 353 - -
Lja6g2081 365 SMART LRR_typ_2 158 180 IPR003591 -
Lja6g2081 365 SMART LRR_typ_2 64 87 IPR003591 -
Lja6g2081 365 SMART LRR_typ_2 135 157 IPR003591 -
Lja6g2081 365 SMART LRR_typ_2 88 110 IPR003591 -
Lja6g2081 365 SMART LRR_typ_2 111 134 IPR003591 -
Lja6g2081 365 SMART LRR_typ_2 181 204 IPR003591 -
Lja6g2081 365 SMART LRR_typ_2 229 252 IPR003591 -
Lja6g2081 365 Pfam Leucine rich repeat 67 122 IPR001611 GO:0005515
Lja6g2081 365 ProSiteProfiles Leucine-rich repeat profile. 90 111 IPR001611 GO:0005515
Lja6g2081 365 Gene3D Ribonuclease Inhibitor 157 283 IPR032675 -
Lja6g2081 365 Gene3D Ribonuclease Inhibitor 2 155 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2081 Lja-Chr6 49314257 49319096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2081 47 265 Receptor kinase-like Gene Family AT2G15080 34.468 3.87e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2081 - - lja:Lj6g3v1315120.1 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2081 6 49314257 49319096 Lja6g2081 6 49314257 49319096 ECH
Lja4g1601 4 14993009 14998241 Lja6g2081 6 49314257 49319096 PCT