Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1601 ATGATGTATGAACAGCAACGGTTTCAGATTCAGCAGCCGCCGGTGAAGAAGAAATCCACTGAGAGGAGCTGCAGATCGGGCATAGAAGAGGAGAAGCTAGAAATTGTGGATTTGAGTGGCATGTCCTTGGAATCTCTTCCCAATCCTTCTCTTAATTTAGCCATCATTTGCAAATTGGACCTCTCCAATAACAATCTCCAGAATATTCCAGAGTCGTTAACGGCGAGACTGCTGAACATGGTGGTGTTGGACGTGCACTCTAACCAGCTCAGGTCCCTCCCAAACTCTGTTGGGTGCCTCTCAAAGCTCAAGGTTCTCAACGTCTCTGGCAACCTCATCGAGTACCTTCCCAAATCAATTGAGAATTGCAGAGCATTAGAAGAATTGAATGCAAACTTCAACAAGCTGAGCCAGCTACCAGACACAATGGGGTTTGAACTCCTAAACCTAAAGAAGCTCTCAGTAAACTCCAACAAGCTCGTCTTCCTCCCACGCTCCACCTCACACCTCACCTCACTCAAAATCCTCGACGCACGTTTGAACTGCCTTAGATCCCTCCCAGATGATCTCGAGAATCTCATCAACCTCGAAACCCTCAATGTCAGCCAAAACTTCCAGTACTTGGACACCCTCCCTTACTCCATAGGCCTCCTCTTGTCCCTCGTGGAACTCGACGTCAGTTACAACAGAGTCAAGTCCTTACCTGACTCCATCGGCTGCCTCAAGAAGCTGCAGAAGCTCAGCGTTGAAGGGAACCCGCTCGTTTCGCCGCCGCCGGAGGTGGTGGAGCAAGGGCTGCACGCGGTGAAGGAGTACTTGTGTAATAAGATGAACTCGGCACATCAAAGCCCAACGAAGAAGAAGTCGTGGGTGGGGAAGTTGGTGAAGTATGGGACTTTTAATGGACACGCGCGGAGTGGTCCGCGTGAGGAGCGTGAGGCTTTTATTGTGGATCATGAGTACAGGTCCATTGATGGACTCGCTTCGCCGCGATACATGGGAATGTTTTCTCCTCGTCGGTTGTTCTCGCCTCGTAGTTACTTTAGCAATTGA 1053 0.4986 MMYEQQRFQIQQPPVKKKSTERSCRSGIEEEKLEIVDLSGMSLESLPNPSLNLAIICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRSLPNSVGCLSKLKVLNVSGNLIEYLPKSIENCRALEELNANFNKLSQLPDTMGFELLNLKKLSVNSNKLVFLPRSTSHLTSLKILDARLNCLRSLPDDLENLINLETLNVSQNFQYLDTLPYSIGLLLSLVELDVSYNRVKSLPDSIGCLKKLQKLSVEGNPLVSPPPEVVEQGLHAVKEYLCNKMNSAHQSPTKKKSWVGKLVKYGTFNGHARSGPREEREAFIVDHEYRSIDGLASPRYMGMFSPRRLFSPRSYFSN* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1601 350 Pfam Leucine rich repeat 58 113 IPR001611 GO:0005515
Lja4g1601 350 ProSiteProfiles Leucine-rich repeat profile. 220 241 IPR001611 GO:0005515
Lja4g1601 350 SMART LRR_bac_2 77 96 - -
Lja4g1601 350 SMART LRR_bac_2 53 72 - -
Lja4g1601 350 SMART LRR_bac_2 218 237 - -
Lja4g1601 350 SMART LRR_bac_2 123 142 - -
Lja4g1601 350 SMART LRR_bac_2 147 166 - -
Lja4g1601 350 SMART LRR_bac_2 100 119 - -
Lja4g1601 350 SMART LRR_bac_2 170 189 - -
Lja4g1601 350 SMART LRR_typ_2 218 240 IPR003591 -
Lja4g1601 350 SMART LRR_typ_2 241 264 IPR003591 -
Lja4g1601 350 SMART LRR_typ_2 53 76 IPR003591 -
Lja4g1601 350 SMART LRR_typ_2 77 99 IPR003591 -
Lja4g1601 350 SMART LRR_typ_2 170 193 IPR003591 -
Lja4g1601 350 SMART LRR_typ_2 100 123 IPR003591 -
Lja4g1601 350 SMART LRR_typ_2 147 169 IPR003591 -
Lja4g1601 350 SMART LRR_typ_2 124 146 IPR003591 -
Lja4g1601 350 MobiDBLite consensus disorder prediction 1 17 - -
Lja4g1601 350 Gene3D Ribonuclease Inhibitor 145 276 IPR032675 -
Lja4g1601 350 Gene3D Ribonuclease Inhibitor 2 144 IPR032675 -
Lja4g1601 350 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 2 343 - -
Lja4g1601 350 MobiDBLite consensus disorder prediction 1 23 - -
Lja4g1601 350 SUPERFAMILY L domain-like 24 265 - -
Lja4g1601 350 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1601 Lja-Chr4 14993009 14998241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1601 54 247 Receptor kinase-like Gene Family AT4G13920 33.498 3.00e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1601 - - gmx:100783239 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1601 4 14993009 14998241 Lja4g1601 4 14993009 14998241 ECH
Lja4g1601 4 14993009 14998241 Lja6g2081 6 49314257 49319096 PCT