LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g2069	ATGACAAATTATAAGTTCCTTATTTGGTTTCTTTTCCTTGTAGCCACCGCCTTTGTGGGGGTGACTTATGCTGGTAACTTTTACCAAGACTTTGAAACAACATGGGGTGATAACCGTGCCAAAATCCTTGAAAATGGGAACCTTCTCACCCTCTCCCTGGACAAAGCCTCAGGTTCTGGCTTTCGTTCCAAGAATGAATACTTGTTTGGAAAATTTGACTTGAAGCTCAAACTTGTGCCTGGTAACTCAGCTGGCACCGTCACAACCTATTATCTATCTTCTCTGGGGTCTACTCATGATGAAATAGATTTTGAATTTCTGGGTAACTTGAGTGGTGATCCATACATTCTTCACACGAATGTATTCGCACAAGGGAAAGGAAACAAAGAGCAACAGTTCTACCTGTGGTTCGACCCCACCAAGGACTTCCACACATATTCCATTCTATGGAATCCTCAAAGCATCATATTCTCTGTGGATGGGACACCAATAAGGGAGTTCAAGAATTTGGCCTCAAAGGGTGTTTCTTTTCCAAAGAGCCAAGCCATGAGGATGTACTCTAGCCTATGGAACGCTGATGATTGGGCCACACGGGGTGGGCTTGTGAAGACGGATTGGACCCAAGCTCCATTCACGGCCTCATACAGAAACTTCAATGCTCAAGCTTGTGTTTGGAGTTCTTCTTCAGGGTCCTCTTGTTCTTCTTCCAAGAAATCTCCATCATCATCATCATCAAGTTCTTCAAGCCAATCATGGCTGAGAGAGTCGCTGGATGCAAACGGGCAAGCCAAGATTCGCTGGGCGCAAAAAAACTACATGATTTACAACTACTGCACCGATACTAAACGTTTCCCACAAGGATCTCCTCCTGAGTGCTCTTTTGCATGA	888	0.4459	MTNYKFLIWFLFLVATAFVGVTYAGNFYQDFETTWGDNRAKILENGNLLTLSLDKASGSGFRSKNEYLFGKFDLKLKLVPGNSAGTVTTYYLSSLGSTHDEIDFEFLGNLSGDPYILHTNVFAQGKGNKEQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPIREFKNLASKGVSFPKSQAMRMYSSLWNADDWATRGGLVKTDWTQAPFTASYRNFNAQACVWSSSSGSSCSSSKKSPSSSSSSSSSQSWLRESLDANGQAKIRWAQKNYMIYNYCTDTKRFPQGSPPECSFA*	296

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g2069	295	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	21	215	IPR000757	GO:0004553\|GO:0005975
	Lja6g2069	295	PIRSF	EndGlu_transf	1	295	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lja6g2069	295	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	248	292	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Lja6g2069	295	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	101	111	IPR008263	GO:0004553\|GO:0005975
	Lja6g2069	295	Pfam	Glycosyl hydrolases family 16	28	207	IPR000757	GO:0004553\|GO:0005975
	Lja6g2069	295	PRINTS	Glycosyl hydrolase family 16 signature	135	152	IPR008264	GO:0004553\|GO:0005975
	Lja6g2069	295	PRINTS	Glycosyl hydrolase family 16 signature	117	130	IPR008264	GO:0004553\|GO:0005975
	Lja6g2069	295	PRINTS	Glycosyl hydrolase family 16 signature	59	77	IPR008264	GO:0004553\|GO:0005975
	Lja6g2069	295	Gene3D	-	14	294	-	-
	Lja6g2069	295	CDD	GH16_XET	22	292	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lja6g2069	295	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	11	294	-	-
	Lja6g2069	295	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	11	294	IPR044791	GO:0004553
	Lja6g2069	295	SUPERFAMILY	Concanavalin A-like lectins/glucanases	27	294	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g2069	Lja-Chr6	49177914	49179803	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g2069	1	292	Glycoside Hydrolase	AT4G25810	67.123	2.91e-144	405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g2069	K14504		-	gmx:100807063	467.618

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g1586	4	14824165	14826270	Lja6g2069	6	49177914	49179803	PCT