LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g1586	ATGGCAAGTAAGATACTCATTGGCCTTCTTTTCACAACCTTTGTGATAGCTGCCTCTGGTAACTTCAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCCAAAATCCTCAACGATGGACAGCTTCTCACCCTGTCCCTAGACAAGGCCTCTGGCTCTGGATTTCGATCCAGAAACGAGTACTTGTTCGGAAAAATTGACATGCAACTTAAGCTCGTACCCGGTAACTCCGCAGGCACCGTTACAGCCTATTATCTATCTTCTGCTGATTGGGACACCCACGATGAAATAGATTTTGAATTTCTGGGAAACTTAAGTGGTGATCCTTATATTCTTCATACAAATGTATTCACACAAGGGAAGGGAAACAGAGAACAGCAGTTCTACCTGTGGTTCGACCCCACCAAGGATTTTCACACATATTCCGTTCTTTGGAATCCTCAGAGCATCATATTCTCTGTGGATGGGACACCCATAAGGCAGTTTAATAATTTGGAATCAAAAGGAGTGGCTTTTCCTAAAAAACAAGCCATGAGGATATTTTCTAGCCTTTGGAATGCTGATGATTGGGCCACAAGGGGAGGTTTGGTGAAGACAGATTGGAGTCAAGCCCCATTCACTGCCTCATATAAAAGTTTCAATGCCCAAGCTTGTGTTTGGACTTCTTCTGGCTCATCTTGCTCTTCCAACCAAGATTCATGGATGAAAGAGTCACTTGATTCAACAGGGCAAGCTAGGATTCAATGGGTGCAGAAGAACTACATGATTTATAACTACTGCACTGATACTAAGCGCTTCCCACAAGGCTTCCCTCCTGAATGCTCAATTGCATGA	837	0.4385	MASKILIGLLFTTFVIAASGNFNQDFEITWGDGRAKILNDGQLLTLSLDKASGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSADWDTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSVLWNPQSIIFSVDGTPIRQFNNLESKGVAFPKKQAMRIFSSLWNADDWATRGGLVKTDWSQAPFTASYKSFNAQACVWTSSGSSCSSNQDSWMKESLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGFPPECSIA*	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g1586	278	PIRSF	EndGlu_transf	2	278	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lja4g1586	278	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	231	275	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Lja4g1586	278	CDD	GH16_XET	17	275	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lja4g1586	278	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	16	211	IPR000757	GO:0004553\|GO:0005975
	Lja4g1586	278	PRINTS	Glycosyl hydrolase family 16 signature	131	148	IPR008264	GO:0004553\|GO:0005975
	Lja4g1586	278	PRINTS	Glycosyl hydrolase family 16 signature	113	126	IPR008264	GO:0004553\|GO:0005975
	Lja4g1586	278	PRINTS	Glycosyl hydrolase family 16 signature	54	72	IPR008264	GO:0004553\|GO:0005975
	Lja4g1586	278	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	97	107	IPR008263	GO:0004553\|GO:0005975
	Lja4g1586	278	Gene3D	-	9	277	-	-
	Lja4g1586	278	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	9	277	IPR044791	GO:0004553
	Lja4g1586	278	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	9	277	-	-
	Lja4g1586	278	Pfam	Glycosyl hydrolases family 16	23	203	IPR000757	GO:0004553\|GO:0005975
	Lja4g1586	278	SUPERFAMILY	Concanavalin A-like lectins/glucanases	21	277	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g1586	Lja-Chr4	14824165	14826270	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja4g1586	3	278	Glycoside Hydrolase	AT4G25810	70.463	3.31e-149	417

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g1586	K14504		-	gmx:100807063	509.99

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g1586	4	14824165	14826270	Lja6g2069	6	49177914	49179803	PCT