Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2066 ATGATGGAGAGTTTAATGAGGAGGAGCAAGTTTCATGTGTTGGTGTTTATGTTGTTCTGTTCATGGTTTTGTTATGTCACTGCCTCTGTGACTTATGATCACAAAGCCATTCTGGTTGATGGAAAGAGAAGAATTTTGATCTCTGGTTCCATCCACTACCCAAGAAGCACCCCTCAGATGTGGCCAGACTTAATCCAAAAGGCCAAAGATGGAGGCATTGATGTTATTCAGACCTATGTGTTTTGGAATGGACATGAACCTTCTCCTGGAAATTATTATTTTGAAGATAGATTTGATCTGGTTAAGTTCATCAAGATAGTGCAGCAAGCTGGCCTTTATGTTAATCTTCGAATTGGTCCCTACGTTTGTGCTGAATGGAACTTTGGGGGATTTCCTGTTTGGCTCAAGTATGTTCCAGGTATTGCTTTCAGAACAGACAATGGGCCGTTCAAGGCGGCTATGCAAAAATTCACTACAAAGATTGTCAACATGATGAAAGCAGAGAAGTTGTTTCAAACTCAGGGTGGTCCAATAATTATGTCTCAGATAGAGAATGAGTATGGACCAGTGGAATGGGAAACTGGTGCTCCTGGGAAGGCTTACACCAAATGGGCTGCTCAAATGGCTGTAGGTCTAAATACTGGGGTCCCTTGGATTATGTGCAAGCAAGAAGATGCCCCTGATCCTCTTATTGACACTTGCAATGCATACTACTGTGAAAAGTTCACCCCCAACAAAAATTACAAACCCAAGATGTGGACTGAGAATTGGACTGGCTGGTACACTGATTATGGTAGTCCAGTCCCTCGTAGACCGGCAGAAGACATGGCATTCTCAGTTGCAAGATTCATACAGAATGGTGGCTCATTTGTTAACTACTATATGTACCATGGAGGAACAAATTTTGGCCGAACGTCGAGTGGTCTCTTCATTGCCACAAGCTATGAGTATGATGCTCCCATTGATGAATATGGACTGCTAAATGAACCAAAATGGGGGCACTTGAGAGATTTGCACAAAGCAATAAAACAATGCGAGCCGGCTTTAGTGTCTGTGGATCCAACGTTGACATTACTTGGAAAGGGCCTTGAGGCACATGTTTTCAAGACAAGCTTTGGCGCTTGTGCTGCATTCCTTGCAAATTATGACACCACATCTTCCAGAACAGTTAAATTTGGAAATGGGCAATACAACCTGCCCCCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGATGTTTACAACACTGCAAGGGTTGGTGTCAAGAGCTGGGAAAAAAAGATGACTCCGGTGAATAGCGCATTCAATTGGCTGTCCTACAATGAACAACCTGCCTCATCCAGTGGGGATGATTCCCTCACAGGTTATGCACTTTGGGAGCAGGTCAATGTGACCCGGGATTCTTCAGATTATCTGTGGTATATGACAGATGTCAACATTGATTCTAATGAAGGTTTAATAAAGAATGGCCAATCTCCTGTTCTTACCGCAATGTCAGCTGGCCATGTTCTGCATGTTTTTGTTAACGGTCAACTTTCAGGAACTGTGTATGGTGGATTGAAGAATCCTAAATTAACATTTAGTGACAGTGTGAAGCTGAGGGTTGGCAACAACAAGATTTCTTTACTTAGTGTATCCGTCGGCCTCTCGAATGTTGGCTCGCACTTTGAAACATGGAATGTTGGAGTGTTAGGACCGGTCACACTGAAGGGCCTAAATGAGGGCACAAGAGATTTGTCTCGGCAGAAATGGTCTTACAAGGTTGGACTGAAAGGTGAAGCCTTGAACCTTCATACCACTAGTGGGAGTTCCTCTGTTCAATGGACACAAGGATCATTAGTGGCTAAAAAACAACCTTTGACATGGTACAAGGCAACTTTTAACGCGCCGGCCAGCAACGATCCGTTGGCTCTAGATATGACTAGCATGGGAAAGGGTGAAGTATGGATAAATGGCCAGAGCATCGGTCGCCATTGGCCTGGATATATAGCGCGCGGTAGTTGTGGTAGTTGTAATTATGCTGGATATTACACTGATACCAAATGCAGGACAAATTGTGGAGAACCCTCACAGAGATGGTACCATATTCCTCGCTCTTGGTTGAATCCAAGTGGGAACTTGGTGGTCGTGCTTGAAGAATTTGGAGGTGACCCTACTGGAATTTCTTTGGTGAAAAGAACATGA 2187 0.438 MMESLMRRSKFHVLVFMLFCSWFCYVTASVTYDHKAILVDGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGIDVIQTYVFWNGHEPSPGNYYFEDRFDLVKFIKIVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYVPGIAFRTDNGPFKAAMQKFTTKIVNMMKAEKLFQTQGGPIIMSQIENEYGPVEWETGAPGKAYTKWAAQMAVGLNTGVPWIMCKQEDAPDPLIDTCNAYYCEKFTPNKNYKPKMWTENWTGWYTDYGSPVPRRPAEDMAFSVARFIQNGGSFVNYYMYHGGTNFGRTSSGLFIATSYEYDAPIDEYGLLNEPKWGHLRDLHKAIKQCEPALVSVDPTLTLLGKGLEAHVFKTSFGACAAFLANYDTTSSRTVKFGNGQYNLPPWSISILPDCKTDVYNTARVGVKSWEKKMTPVNSAFNWLSYNEQPASSSGDDSLTGYALWEQVNVTRDSSDYLWYMTDVNIDSNEGLIKNGQSPVLTAMSAGHVLHVFVNGQLSGTVYGGLKNPKLTFSDSVKLRVGNNKISLLSVSVGLSNVGSHFETWNVGVLGPVTLKGLNEGTRDLSRQKWSYKVGLKGEALNLHTTSGSSSVQWTQGSLVAKKQPLTWYKATFNAPASNDPLALDMTSMGKGEVWINGQSIGRHWPGYIARGSCGSCNYAGYYTDTKCRTNCGEPSQRWYHIPRSWLNPSGNLVVVLEEFGGDPTGISLVKRT* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2066 728 Gene3D Glycosidases 24 346 - -
Lja6g2066 728 Pfam Glycosyl hydrolases family 35 37 341 IPR031330 -
Lja6g2066 728 Pfam Beta-sandwich domain in beta galactosidase 349 420 IPR041392 -
Lja6g2066 728 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
Lja6g2066 728 PANTHER BETA-GALACTOSIDASE 11 728 - -
Lja6g2066 728 Gene3D - 583 728 - -
Lja6g2066 728 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 PRINTS Glycosyl hydrolase family 35 signature 252 267 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 PRINTS Glycosyl hydrolase family 35 signature 289 304 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 SUPERFAMILY Galactose-binding domain-like 584 724 IPR008979 -
Lja6g2066 728 PANTHER BETA-GALACTOSIDASE RELATED 11 728 IPR001944 GO:0004553|GO:0005975
Lja6g2066 728 Gene3D - 452 582 - -
Lja6g2066 728 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
Lja6g2066 728 SUPERFAMILY Galactose-binding domain-like 404 574 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2066 Lja-Chr6 49133359 49139813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2066 2 727 Glycoside Hydrolase AT3G13750 69.505 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2066 - - gmx:106795462 1292.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2066 6 49133359 49139813 Lja6g2066 6 49133359 49139813 ECH
Lja4g1578 4 14765613 14771091 Lja6g2066 6 49133359 49139813 PCT