Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1578 ATGGGTTCCCAGGACTTGATGGAGAGTTTACTGAGGGGAAAGTTATCTATTCTGCTGCTATTTTTGTGGGTTTGTGCAGCCACTGGATCAGTGACATATGATCACAAAGCCATTCTTGTCAATGGGCAGAGAAGAATTTTGATCTCTGGCTCCATTCACTATCCAAGAAGCACACCTCAGATGTGGCCAGACCTTATTCAAAAAGCCAAAGAGGGAGGGTTAGATGTTATACAAACCTATGTATTTTGGAATGGACATGAGCCTTCTCCAGGAAAGTACTATTTCGAGGATAGGTACGACTTAGTCAAGTTCATAAAGCTTGTGCAGCAAGCTGGCCTTTATGTTCATCTCCGCATTGGTCCCTACATTTGTGCTGAGTGGAACTTTGGGGGATTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTGTTTTCAGAACAGACAATGAGCCTTTTAAGGCAGCAATGCAAAATTTTATTGAGAAGATTGTCAGCATGATGAAGGCAGAGAGATTGTTTCAGACACAAGGAGGTCCAATAATTTTGTCCCAGATAGAGAACGAGTTTGGACCAATGGAGACGTCCATTGGTGCTCCTGCAATAGCTTACACGAAATGGGCTGCTCAAATGGCTGTAGGATTAAATACTGGAGTCCCATGGATTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTAACACCTGCAATGGGTTCTACTGCGAAAATTTCACCCCAAACAAGAACTACAAACCCAAAATGTGGACTGAAAACTGGACTGGCTGGTTCACTGAGTTTGGTGGTGCGGTCCCTCGTAGGCCAGCACAAGACTTGGCATTCTCAGTTGCGAGATTCGTACAGAATGGGGGCTCATTTGTTAACTACTATATGTATCATGGAGGAACTAACTTTGGCCGAACATCAAGTGGTCGCTTCAAAGCCACAAGCTATGACTTTGATGCCCCAATTGATGAATATGGACTTCTTAACGAACCAAAATGGGGGCATCTGAGAGATTTACACAAAGCAATAAAACTATGTGAACCAGCTTTGTTGTCTGTAGATCCCACGGTGTCCTGGCCTGGAAATAACCTTGAGGTACATGTGTTCAAGGAAAAATCGGGTGCTTGTGCTGCATTCCTTGCAAATTACGACACCAAATCTTCCGCAACACTTACATTTGGAAATGGAAAATATGACTTACCACCTTGGTCTATCAGCATTCTTCCTGACTGCAAAACTGCAGTTTTCAACACTGCAAGGCTTGGTTCTCAAAGCTCCGAGATGAAGATGATTGCTGTAAACAGTGGATTTTCCTGGCAGTCATACAATGAAGAACCAGCATCATCCAGTGTAGATGATCAAATCACAGCATATTCACTATGGGAGCAGATTAATGTCACTCGAGATTCAACAGATTATTTGTGGTATATGACAGATGTCAATATTAATCCCAATGAAGGTTTTATAAAGACTGGACAATCCCCTCTTCTTACTGTAATGTCTGCAGGGCATGTTTTGCATGTTTTCATTAATAGTCAACATTCAGGAACTGTGTACGGGGCATCGAGTTCTCCAAAATTAACATTTAGTGACAGGGTTAACCTGAGAGTTGGAAATAACAAGATTTCTTTACTTAGTGTTGCTGTGGGTCTCCCGAATGGTGACCTGCACTTTGAGACATGGAATGTTGGCGTGTTAGGCCCGGTCACACTTGATGGTCTAAATGAGGGAATTAGAGACTTGTCGCGGCAGAAATGGTCCTACAAGATTGGTCTAAAGGGAGAAACATTAAACCTTCACACTATAAGTGGGAGTGCCTCTGTTGAATGGGTACAAGGATCATTAATAGCTAAAAATCAACCTTTGACATGGTACAAGACAACTTTTAACACACCAGCAGGCAATGATCCATGGGCTCTAGATATGAGTAGTATGGGAAAGGGTCAAGTATGGATAAATGGTCATAGCATTGGACGCCATTGGCCTGGATATATAGCAAATGGTGAATGTGGGGAATGTTATTATGCTGGAACCTATACTAAAACAAAATGCAGGACAAATTGTGGAGAACCCTCCCAGAGATGGTACCATGTTCCTCGGTCGTGGCTGAACCCAAGTGAGAACTATCTGGTTGTGTTTGAAGAATTTGGAGGCGATCCTGCAGGAATTTCTCTAGTGAAAAGAACAACGGCAAGCGTTTGTGCTGATATATATGAAACTCTAATGACTGGACAGATGCTAGACTCTGGAAATGTTAATACCAAAGCTCACTTGTTGTGTCCACCTGGGAAAAAAATCTCACATATCAAATTTGCAAGCTATGGATTGCCACAGGGAAATTGTGGTAATTTTCAAGAGGGGAAATGTCATGCTCACAAATCATATAATGCTCCTCAAAGGAGCTGCATTGGCAAGCAAACTTGCATGGTAACTGTAGCTCCTGAAGTTTTTGGGGGAGACCCATGTCCCGGATTTGCAAAGAAATTCTCAGTTGAGGCCCTATGCAGCTAG 2511 0.4277 MGSQDLMESLLRGKLSILLLFLWVCAATGSVTYDHKAILVNGQRRILISGSIHYPRSTPQMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKLVQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIVFRTDNEPFKAAMQNFIEKIVSMMKAERLFQTQGGPIILSQIENEFGPMETSIGAPAIAYTKWAAQMAVGLNTGVPWIMCKQEDAPDPVINTCNGFYCENFTPNKNYKPKMWTENWTGWFTEFGGAVPRRPAQDLAFSVARFVQNGGSFVNYYMYHGGTNFGRTSSGRFKATSYDFDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALLSVDPTVSWPGNNLEVHVFKEKSGACAAFLANYDTKSSATLTFGNGKYDLPPWSISILPDCKTAVFNTARLGSQSSEMKMIAVNSGFSWQSYNEEPASSSVDDQITAYSLWEQINVTRDSTDYLWYMTDVNINPNEGFIKTGQSPLLTVMSAGHVLHVFINSQHSGTVYGASSSPKLTFSDRVNLRVGNNKISLLSVAVGLPNGDLHFETWNVGVLGPVTLDGLNEGIRDLSRQKWSYKIGLKGETLNLHTISGSASVEWVQGSLIAKNQPLTWYKTTFNTPAGNDPWALDMSSMGKGQVWINGHSIGRHWPGYIANGECGECYYAGTYTKTKCRTNCGEPSQRWYHVPRSWLNPSENYLVVFEEFGGDPAGISLVKRTTASVCADIYETLMTGQMLDSGNVNTKAHLLCPPGKKISHIKFASYGLPQGNCGNFQEGKCHAHKSYNAPQRSCIGKQTCMVTVAPEVFGGDPCPGFAKKFSVEALCS* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1578 836 PANTHER BETA-GALACTOSIDASE RELATED 16 729 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 Gene3D - 748 836 IPR043159 -
Lja4g1578 836 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Lja4g1578 836 ProSiteProfiles SUEL-type lectin domain profile. 750 836 IPR000922 GO:0030246
Lja4g1578 836 SUPERFAMILY Galactose-binding domain-like 405 575 IPR008979 -
Lja4g1578 836 Pfam Galactose binding lectin domain 759 835 IPR000922 GO:0030246
Lja4g1578 836 Pfam Beta-sandwich domain in beta galactosidase 350 420 IPR041392 -
Lja4g1578 836 Gene3D Glycosidases 25 346 - -
Lja4g1578 836 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Lja4g1578 836 SUPERFAMILY Galactose-binding domain-like 585 740 IPR008979 -
Lja4g1578 836 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Lja4g1578 836 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 PRINTS Glycosyl hydrolase family 35 signature 647 663 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 PRINTS Glycosyl hydrolase family 35 signature 620 634 IPR001944 GO:0004553|GO:0005975
Lja4g1578 836 Gene3D - 592 734 - -
Lja4g1578 836 PANTHER BETA-GALACTOSIDASE 16 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1578 Lja-Chr4 14765613 14771091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1578 16 836 Glycoside Hydrolase AT3G13750 69.036 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1578 - - gmx:100810170 1502.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1578 4 14765613 14771091 Lja4g1578 4 14765613 14771091 ECH
Lja4g1578 4 14765613 14771091 Lja6g2066 6 49133359 49139813 PCT