Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2056 ATGGGGGAAAATTTCCTTTCTCCAACATACTTGATTCTCCTGCTAATAACCATCACACGGTTGATATCCACAGTGGGGAAAACCGAGCAATGGAAATCCCTGCTACTACCAGAGATATCCAACAAGCTCCGTGAGGACCCTGAAGCCATTCAAGGAGCTTCAAGGGACTACGGCAACCTCATCCACGATGTCCCAGCAGGGGTGTTTGTTCCATCCTCGGTGCAGGACATAGCTACTCTGATAAAGCTTTCATACAACAACAACAAAGTTGGTGATTCTGTCCCTTTCAGCATCGCGGCGAGGGGTCAGGGGCACTCAACGAAGGGACAGGCGATGGCGCGCGACGGGGTGGTGGTGGACATGGCAAGGTTCAGAGAAGGAGGGAATGGTGTTGGAATCACTGTTGGAGGAGGAGGGGGAAAGCAGTACTATGCTGATGTTGGTGGAGAGCAACTTTGGATTGATGTGCTGCGTGCCGCCATGGAGCATGGACTTACACCTGTTTCTTGGACTGATTACTTGTATTTGACTGTGGGAGGGACTCTTTCCAATGCTGGCATAAGTGGCCAGACATTCAAATATGGTCCTCAAATCACAAGTGTTCTTGAAATGGATGTCATCACCGGAAAAGGAGAATCTGTAACCTGCTCCAAGCAGACAAATTCAGAGTTATTCTACGCGGTTCTTGGAGGTTTAGGACAATTTGGAATTATAACAAGGGCCAGAATTGCTCTGGAGCCAGCACCCAAGAGGGTTAAATGGGTCAGATTTCTTTATGATGACTTTTCTGCTTTCACCAAAGACCAGGAACGATTAATCTCAATCAATGGAAGCAAACAAAAAAATAGATTGGATTATTTGGAAGGGATGCTGCTAATGCACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAGCCGACCATCCAAGAATAATTTCCCTAGTAACTCAACATAGAGTCCTCTATTGCCTTGAAGTGGCCAAATATTATGATGACCAATCCGAAGTCAATGTGGACAAGGAACTGCAAGTTTTGTTTCAGGGACTGAGCTATATCCCTGGATTTTACTATGAAAAAAATGTCTCATTTGTTGAGTTCTTGAATAGAGTCAGAAGTGGAGAACTGAAGCTTCAGTCACAAGGACTATGGGATGTTCCTCATCCATGGCTTAATTTGTTTATACCAAAATCTCAAATCTTGGATTTTGATTCAGGTGTATTCAAGAATATCATTCATAAAAGAAACATCACTACAGGACCTGCCTTGGTTTACCCCATGAACAGAAACAAGTGGGACAATAAGATGTCAGCATCTATACCAGATGAGGATGTGTTCTATGCAGTTGGATTTTTGCACTCAAGTGGGTTTGATAATTGGAAGGCTTATGATGCTCAGAACAGAGAGATCTTGCAATTTTGTAATGATGCAGGGATTAAGTATAAGCAATACCTTCCCCACTACCGCACACAGGAAGGTTGGACAAACCATTTTGGTCCTAAATGGGGGACTTTTTCGGAAAGAAAACACCAGTTTGATCCAAGAATGATTCTTTCACCAGGACAAAGAATCTTCAACAACAATTAA 1593 0.435 MGENFLSPTYLILLLITITRLISTVGKTEQWKSLLLPEISNKLREDPEAIQGASRDYGNLIHDVPAGVFVPSSVQDIATLIKLSYNNNKVGDSVPFSIAARGQGHSTKGQAMARDGVVVDMARFREGGNGVGITVGGGGGKQYYADVGGEQLWIDVLRAAMEHGLTPVSWTDYLYLTVGGTLSNAGISGQTFKYGPQITSVLEMDVITGKGESVTCSKQTNSELFYAVLGGLGQFGIITRARIALEPAPKRVKWVRFLYDDFSAFTKDQERLISINGSKQKNRLDYLEGMLLMHQGPINNWRSSFFPLADHPRIISLVTQHRVLYCLEVAKYYDDQSEVNVDKELQVLFQGLSYIPGFYYEKNVSFVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKSQILDFDSGVFKNIIHKRNITTGPALVYPMNRNKWDNKMSASIPDEDVFYAVGFLHSSGFDNWKAYDAQNREILQFCNDAGIKYKQYLPHYRTQEGWTNHFGPKWGTFSERKHQFDPRMILSPGQRIFNNN* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2056 530 Gene3D - 121 250 IPR016169 -
Lja6g2056 530 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 527 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lja6g2056 530 Pfam FAD binding domain 65 217 IPR006094 GO:0050660
Lja6g2056 530 Gene3D - 46 527 IPR016167 -
Lja6g2056 530 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 528 IPR016164 GO:0003824|GO:0050660
Lja6g2056 530 SUPERFAMILY FAD-binding/transporter-associated domain-like 43 247 IPR036318 GO:0050660
Lja6g2056 530 Gene3D - 251 486 IPR016170 -
Lja6g2056 530 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 11 528 - -
Lja6g2056 530 ProSiteProfiles PCMH-type FAD-binding domain profile. 61 248 IPR016166 GO:0071949
Lja6g2056 530 PANTHER GULONOLACTONE OXIDASE 11 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2056 Lja-Chr6 49016493 49020318 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2056 K00279 - gmx:100804431 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2056 6 49016493 49020318 Lja6g2056 6 49016493 49020318 ECH
Lja4g1573 4 14716124 14721384 Lja6g2056 6 49016493 49020318 PCT