Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1573 ATGGCAAGGCACTATACACTTTCAAAAGCTTTAATTTTGCTATGGCTTAATACCATAGTGCACACACATGTACTATCGCAACCATGGTCACCACTAGATGCACCTAAAGAAATAGCCCAGCAACTTATTCGTGACCCTGTGATCCTTTCACTAGCCTCAACCGATTTCGGCCACATAGTTCACAAAAACCCGTTTGCGATTTTCACTCCGTCGTCCGTTAAGGACATTTCCAAATTGATAAAATTCTCAAAAACTCTTCCCATTCCGTTCACTATAGCTCCAAGAGGGCAAGCTCACTCGCTTCGTGGACAAGCCATGACAAACAATGGGCTTGTGGTGAATATGACTGCATTGAATGAGTTTAGAAATGGGAGTGGGATTGTGGTGTTTGATAAGGAAACTCCTCCATATGTAGATGTTCGGGGTGGGCAAATTTGGATTGATGTGCTTCATGCTACGCTTCAACATGGACTTACACCCCTCTCTTGGACTGACTACTTGTATCTATCAGTTGGTGGAACTCTCTCCAATGCTGGGATTAGTGGCCAAACCTTTCGATTCGGTCCTCAGATTTCCAATGTTCATGAATTGGATGTTGTTACGGGGAAAGGTGACACCGTGACTTGTTCTACAAAGAAAAACTCAGATTTATTTTACGCCGTTCTTGGAGGATTGGGCCAATTTGGGATTATAACCAGAGCAAGAATAGCTCTTGGACCTGCACCTACTAGGGCGAAGTGGCTCCGTTTATTGTACAATGACTTCTCTGCATTTTCTAGAGACCAAGAACATTTAATCTCATTCAATGGAAGAAACGATACGAATGCACCTGATTATGTTGAAGGCCAACTTCTGCTGAATCAACCGTCACAGGCCCTATCATTCTATCCAGGATCTGATCAACCACGCATAACTTCACTAATAACCCAATTTGGCATCATCTATATCATAGAACTTGTCAAATACTACGATGATAGTTCTGAAGATCACATTGACCAAGAAATTGAACTTTTGACTCAGGGATTAAAGTTTGTTCCTACGTTTATGTTCGAAAAGGATGTCTCGTACGAACAGTTTCTGAACAGAGTTCATGATGATGAGCTTCTTCTCAGGTCACAAGGATTGTGGGATGTTCCACATCCTTGGTTAAACCTCTTTGTTCCAGCATCTAGAATCTCTGATTTTGATGAAGGTGTGTTCAAGGGCATAATTCTAAAGCAAAATATAACAGCAGGGCTTGTGCTAATCTACCCCATGAACAAAACAAAGTGGGATGACAAGATGTCAGCAGTTACACCTGATGCAGATGTTTTCTATGTGATATCTTTTTTGCGTATAGCTAATTTTGAAACATTGGAAGCACTTCAAGTTCAAAACCAACAAATAATACAATTATGTGTGGATATTGGTATAGGGATGAAGCAATATCTTCCCCTAATCAAAACACAGGAAGAATGGGTGGCACAATATGGCCTCAAATGGAAAACCATCCAAGACAGAAAAATTCAATTTGATCCCAACAAAATATTGTCACCTGGACAAGGGATTTTCAATTAG 1557 0.4078 MARHYTLSKALILLWLNTIVHTHVLSQPWSPLDAPKEIAQQLIRDPVILSLASTDFGHIVHKNPFAIFTPSSVKDISKLIKFSKTLPIPFTIAPRGQAHSLRGQAMTNNGLVVNMTALNEFRNGSGIVVFDKETPPYVDVRGGQIWIDVLHATLQHGLTPLSWTDYLYLSVGGTLSNAGISGQTFRFGPQISNVHELDVVTGKGDTVTCSTKKNSDLFYAVLGGLGQFGIITRARIALGPAPTRAKWLRLLYNDFSAFSRDQEHLISFNGRNDTNAPDYVEGQLLLNQPSQALSFYPGSDQPRITSLITQFGIIYIIELVKYYDDSSEDHIDQEIELLTQGLKFVPTFMFEKDVSYEQFLNRVHDDELLLRSQGLWDVPHPWLNLFVPASRISDFDEGVFKGIILKQNITAGLVLIYPMNKTKWDDKMSAVTPDADVFYVISFLRIANFETLEALQVQNQQIIQLCVDIGIGMKQYLPLIKTQEEWVAQYGLKWKTIQDRKIQFDPNKILSPGQGIFN* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1573 518 PANTHER GULONOLACTONE OXIDASE 8 518 - -
Lja4g1573 518 Pfam FAD binding domain 66 210 IPR006094 GO:0050660
Lja4g1573 518 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 242 517 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lja4g1573 518 Gene3D - 115 243 IPR016169 -
Lja4g1573 518 Gene3D - 49 517 IPR016167 -
Lja4g1573 518 ProSiteProfiles PCMH-type FAD-binding domain profile. 60 241 IPR016166 GO:0071949
Lja4g1573 518 SUPERFAMILY FAD-linked oxidases, C-terminal domain 242 518 IPR016164 GO:0003824|GO:0050660
Lja4g1573 518 Gene3D - 244 476 IPR016170 -
Lja4g1573 518 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 8 518 - -
Lja4g1573 518 SUPERFAMILY FAD-binding/transporter-associated domain-like 41 240 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1573 Lja-Chr4 14716124 14721384 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1573 K00279 - gmx:100816815 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1573 4 14716124 14721384 Lja6g2056 6 49016493 49020318 PCT