Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2052 ATGGCGAGGCTGCTTCGCAACGCCAACACGTTCCTTCTCAAGCGCTCTTTCCTTCACCATAACCTTCCCACTCGTTCTTGCTATGAACAAGGAGTAGTGGGCACGTCTCAAGTTTTGAGCTTTTCAACGCATAAAGGTAAAAGGCGCTCTAAGTCAGATGGAGATGAGTCTAGTGAAGAGAACATGTCTAAAAAAGATTTGGCCCTACAACAAGCCCTAGATCAGATCACTTCTGCATTTGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTCTCACCCAAAAATGTACCTGTGGTGTCAACTGGTTCTTTTGCTCTTGATATAGCTCTTGGAATCGGTGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCCGAGGCTTCTGGGAAAACAACTCTTGCTTTGCACGTGATTTCAGAGGCACAAAAGCTAGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCTATTGGGGTAAATACTAAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCCGGAGTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCATATGGCAATGCAAGCTAGGTTGATGAGCCAGGCACTGCGGAAATTGTGCCACTCCTTGTCACTTTCACAATGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTTTATTCTTCTGTGCGGCTAAATATCAAAAGAATAGGGCTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGCCATGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATATGTAGAGACGCAGAGATTATAGAGTTGAGCATAAAATACAAACTCATTAGAAAGAGTGGTTCATTTTATGAATATAATGGCCGGAATTACCACGGTAAGGATGCTCTAAAGAGGTTCCTGGCTGACAGTAGCAGTACAGAAGAATTAGCAACAAAGCTAAGGGAGAAACTTCTTAATGGCGAGACAGATACGGCTCCAGAGGCGCAAGTGACGATTGGAGATGTTTCGGAAGAAACGGTATTTCCTGATTCTACTGATGAAGAAGCAGCTGCTGTTGTCGAAGCATGA 1281 0.4395 MARLLRNANTFLLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEENMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETLGSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNYHGKDALKRFLADSSSTEELATKLREKLLNGETDTAPEAQVTIGDVSEETVFPDSTDEEAAAVVEA* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2052 426 Hamap Protein RecA [recA]. 65 392 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja6g2052 426 MobiDBLite consensus disorder prediction 46 63 - -
Lja6g2052 426 Pfam recA bacterial DNA recombination protein 68 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja6g2052 426 MobiDBLite consensus disorder prediction 43 64 - -
Lja6g2052 426 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 412 - -
Lja6g2052 426 SUPERFAMILY RecA protein, C-terminal domain 335 386 IPR023400 -
Lja6g2052 426 Gene3D - 95 393 IPR027417 -
Lja6g2052 426 ProSiteProfiles RecA family profile 2. 265 336 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lja6g2052 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 331 IPR027417 -
Lja6g2052 426 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lja6g2052 426 SMART AAA_5 118 292 IPR003593 -
Lja6g2052 426 MobiDBLite consensus disorder prediction 388 426 - -
Lja6g2052 426 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja6g2052 426 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja6g2052 426 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja6g2052 426 PRINTS RecA protein signature 360 377 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja6g2052 426 PRINTS RecA protein signature 307 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja6g2052 426 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja6g2052 426 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lja6g2052 426 PANTHER RECA 1 412 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja6g2052 426 TIGRFAM tigrfam_recA: protein RecA 65 385 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2052 Lja-Chr6 48968676 48974350 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2052 K03553 - gmx:100798983 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2052 6 48968676 48974350 Lja6g2052 6 48968676 48974350 ECH
Lja4g1565 4 14621249 14627690 Lja6g2052 6 48968676 48974350 PCT