Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1565 ATGGCGAGGCTGTTTCGGAACACTATCCTTCTCAGTCGCTCCCTGTTCGTCCCTCAGGGCTTTAAACTAGGAATATGTGGCACTTCACAGGCTTTGAGCTTTTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGACTTGGCCCTTCAACAAGCTCTTGATCAGATTACTTCCGCATTTGGAAAAGGATCTATTATGTGGCTTGGTCGCTCTGTCTCACCAAAAAATGTACCTGTTGTGCCTACTGGTTCTTTTGCTCTAGATTTAGCACTAGGAATTGGTGGCCTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACTACTCTTGCTTTGCATGTGATTGCGGAGGCACAGAAGCAAGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCCCTAGATAGGACACTTGCAGAGTCTATTGGTGTGAATACCAACAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCTCTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCACTCTTTGTCGCTTTCTCAAAGTATATTGATTTTCATAAACCAGGTGAGGTCTAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTGGTAATGCCTTGAAATTCTATGCTTCTGTGCGACTTAATATCAAGAGAATAGGATTTGTCAAGAAAGGCGAAGAGATTATAGGAAGCCAGGTTGTTGTCAAGGTTGTGAAGAACAAGCTTGCACCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCAAGGGTATATCTAGGAAAGCCGAGATTATAAAGTTGAGCTTAAAATACAAACTCATCACCAAAGCTGGTTCAATGTATTACTACAACGAGCAGAGTTTCCGCGGCGGGGATGCTCTCAAGGATTTTCTGGCTGAGAATCCTACTGCATTGGAAGAACTTGAAATGAAGCTCAGGGAGAAGCTTCTCAATCCTGAAACAGAAAAGGTGCCAGAGTCAGATAGCGGAGAAGTCCTGGAAGAAATTGCAACCCTTGATTCTACTGACGAAGAAACCGCAGTTGTTGTAGAAGCATGA 1254 0.4394 MARLFRNTILLSRSLFVPQGFKLGICGTSQALSFSSKGRRRSKSDGSDSGEENMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVPTGSFALDLALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQSILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIIGSQVVVKVVKNKLAPPFKTAEFELQFGKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSFRGGDALKDFLAENPTALEELEMKLREKLLNPETEKVPESDSGEVLEEIATLDSTDEETAVVVEA* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1565 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 323 IPR027417 -
Lja4g1565 417 SMART AAA_5 110 284 IPR003593 -
Lja4g1565 417 MobiDBLite consensus disorder prediction 38 55 - -
Lja4g1565 417 ProSiteProfiles RecA family profile 2. 257 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lja4g1565 417 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lja4g1565 417 Pfam recA bacterial DNA recombination protein 60 324 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja4g1565 417 TIGRFAM tigrfam_recA: protein RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja4g1565 417 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 408 - -
Lja4g1565 417 PANTHER RECA 1 408 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja4g1565 417 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lja4g1565 417 Gene3D - 87 387 IPR027417 -
Lja4g1565 417 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja4g1565 417 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja4g1565 417 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja4g1565 417 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja4g1565 417 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja4g1565 417 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lja4g1565 417 SUPERFAMILY RecA protein, C-terminal domain 325 380 IPR023400 -
Lja4g1565 417 MobiDBLite consensus disorder prediction 36 56 - -
Lja4g1565 417 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1565 Lja-Chr4 14621249 14627690 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1565 K03553 - gmx:100781271 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1565 4 14621249 14627690 Lja4g1565 4 14621249 14627690 ECH
Lja4g1565 4 14621249 14627690 Lja6g2052 6 48968676 48974350 PCT