Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2028 ATGTTGTCGAGAATGGAAGCTGGTAAGAAGAGTAGTGGTGGTACTAGTGGGGGTTCTAGTAACCAGAAGAAGTTGTTAAAGGATGTTGAAACTATAAACAAAGTTATGTATTTGGACCGAAGCGCGTCAAGGAGTTCGATATCTTCTGCGAATTCTCGATCTAAACCCGCCGGGCAGTCCTTGTTCTCTGATCCCAAATCGAGGGCTAAATCGAGTGGCAATAATGATGATGGTAGTAGTACATTGCAGAAGGATAAGAAGTCCATTTGGAATTGGAGGCCGCTGAAGGCGTTTTCGCATATTCGCAATAAGAGGTTCAATTGCAGTTTTTATCTCCAGGTGCATTTGATTGAAGGGTTGCCTTCCAATTTTGATGATTGCAGCCTTTCTGTGTACTGGAAGAGACGCGATGGGGTTCTGGTGACGCGTCCGGCGAAGGTGGTTCAGAGTGTGGCTGAGTTTGAAGAGAAGTTGAGTTACACTTGCTCAGTGTATGGAAGTAGGAGTGGGCCTCACCATTCTGCGAAGTATGAAGCGAAGCACTTTTTGCTGTATGCTTCGCTTCTCAGTGCGCCTGAACTTGATTTGGGGAAGCACCGGGTGGATCTGACGAGGCTGCTTCCTCTTACTCTAGAGGAGCTTGAGGAGGAGAAGAGCTCGGGGAAGTGGACTACTAGTTTTAGATTGTCAGGAATGGCGAAGGGTGCTGTGATGAATGTCAGTTTTGGGTATACTGTGGTTGGTGATAACGCTAATGCTGCCAGAGACAGCCGCAATGCTCCTAATGTTTTGATTCAGAGGCAGAACAGTCTTGCTTTGACGAAACCAGATGCTAATCCTAGACAGTACGATGGAAGCAGCAGTGTGAGGCGTGCTGGAAGTTTGCAAATCTTAAGGAGCCAGGACTTATCTCGGGCTGCGGATGAGGTAAAGGATCTTCATGAGGTACTGCCACCATCTAAGTCAGTGCTAGCTAGCTCCATAGACATCTTATATAAAAAATTTGAAGAAGACAAGGCATGTAACCCTCCACATAATGAACCTGAACTTGATTCGTTCATAGAAAACATTGAGCCAATCAAACTAGATGCATTTGCTTCATCCGATCTTGGAACTGTACAGCATGCAGGTGATGATGGAAATACATGTCCTGGGCATGACAAACCTGAACTCGATGCATTTCAAGAAAACCTGGAGATAATTAAACAAGATGGATATTCTGTACCTGATTCTGGAAAAGAAGACCCTCAAGAGAGTCAAGATAATGATTTTTTTGTCGTTGATAAGGGCATAGAGTTGTCACCAGATGAAAGTGTTAAACTAGAGGAACCCATCAAAAAGGCTCCTGAGGATGCTTCTACAGTTGACAGTACTCCTACCCTTGATACTACAGCTATACAAGTATATTCAGAAGATGGTGTTAAAAATGATTCCCTGGATGAGCCAAATGATAGTTCTAAGGATCAGACAGTGGTTGGCGAATTTGCTTGCGAAGTGAATCGTTCATGTACAAATGAACTGCTGCAAGAATTAGAATCAGCTTTGAATAGTGTAACAGAATTGGAGACAGTGGCACTAGAATCTCCTGATATTATGGAAGCCAAATCTGAGTATACGATGAGAAAGTCGCATAGCTTGGATGATGTTACAGAATCAGTTGCGACTGAATTTTTAAGCATGCTGGGCATGGACCACAGCCCAGGGGGCTTGAGTTCTGAAAGTGAGCCTGAGTCTCCAAGGGAGCTTCTTTTAAGACAATTTGAGAAGGAGGCTCTGAATGGGGGCTTTCCTTTATTTGCTTTTGACATGGATGATGATAATGAAGCAGATGATGGCTATGATGTTCCTACTGAATCTGAGCTGTGGAATTTCTCTGAGGGTATTGAGTCATCATCTTTATTGCAAGATCTGCCGAAGGAGCATCTAGTTGAGTCTCAGGACATGAAGAGTAAACAGAAGGCTCAGATGTTAGAAGACTTGGAAACTGAAGCCTTAATGCGTGAATGGGGTTTGAATGAGAAGGATTTCTATCATTCTCCACCAAAAGATTACGCTGGTTTTGGAAGTCCAATTCATTTACCACCGGAAGAGCCTCCCACATTGCCCCCCCTTGCTGAGGGATTAGGCCCTTTTCTTCAGACTAAAGACAGGGGTTATCTACGCTCTATGAACCCCTCACTTTTTAGCAACACTAAAAATGATGGGAACTTAATCATGCAGGTTTCCAACCCTGTTGTGGTACCTGCAGAAATGGGTTCTGGAATAACAGAGGTTTTGCAGTGCTTGGCTTCAGTGGGAATTGAAAAACTCTCAATGCAGGCAAAGGAGTTAATGCCTCTGGAAGATATCACAGGGAAGACAATGCATCAAATAGCATGGGAAGCTATGCCTTCCTTAGAGGGAGCAGAGAGGCAATGTAATTTGCAGCATGATTCAACAGCAGGGCATGATACTACTCCTGTGCGAAGGGACTTGAAAGGAACACCATCTGGACCAAAGTCTGCTAAGTCTAGTTCAAGTTCAGTGGCGAACCAGACAGGCTCAGAGTTTGTTTCATTGGAAGACCTTGCCCCATTGGCTATGGATAAAATTGAAGCGCTTTCAATTGAGGGTTTGAGAATACAATCTGGGATGTCGGAGGAGGATGCACCGTCAAACATCGTTGCACAATCCATTGGGGATTTGTCAGCTCTCCAGGGCAAGGGGATTGATACTAGCGGATCCCTTGGCCTGGAAGGAGCTGCTGGTTTGCAGTTGTTGAATGTAAAAGACAGCACTGATGGTGTTGATGGGAGTGTTGATGGGATAATGAGCCTGTCATTAACTCTTGATGAGTGGATGAGGCTGGATTCTGGTGAGATTGATGATGTAGATAATATCAGTGAACACACTTCCAAACTTCTTGCAGCCCATCATGCTAATTCTTTCGACTTTATGCGTGGGATTTCAAAGGGAGAGAGGAGACGAGGCAAAGGCAGAAAATGTGGTTTGCTAGGAAACAATTTCACAGTAGCATTGATGGTGCAACTTCGCGATCCTCTGAGAAACTATGAGCCTGTTGGAACGCCAATGCTTGCTCTTATACAAGTTGAGAGAGTGTTTGTCCCGCCAAAGCAGAAAATTTTCAGCTATGTATCTGAGGTAAGAAACAACAATGATAACGATGATGATGAGAGCGAAATAGTAGCAAAGGTGGAGATGAAGGACACAAAGAAAGAGGAAAAAAGCTCTGAAGAGGAAGGCATCCCACAGTTCAAAATTACTGAAGTTCATGTGGCAGGTTTGAAGAATGAGCCTCACAAGAAGAAGCTCTGGGGCACTTCAAGTCAGCAACAGTCTGGTTCGCGCTGGTTGGTGGCTAATGGAATGGGGAAGGGGAAGGGTAATAATAAGCTTCCATTGATGAAATCAAAGGCTGCTTCAAAATCTAGTGCTCCAGTTACAACAAAGGTGCCGCCGGGTGAAACCTTGTGGAGCATATCTTCTCGGATTCTTGGTTCAGGAGCGAAATGGAAGGAATTGGCAGCACTGAATCCTCATATAAGAAACCCTAATGTCATTATACCAAATGACACTATTAGACTTAGTTAA 3591 0.4428 MLSRMEAGKKSSGGTSGGSSNQKKLLKDVETINKVMYLDRSASRSSISSANSRSKPAGQSLFSDPKSRAKSSGNNDDGSSTLQKDKKSIWNWRPLKAFSHIRNKRFNCSFYLQVHLIEGLPSNFDDCSLSVYWKRRDGVLVTRPAKVVQSVAEFEEKLSYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGMAKGAVMNVSFGYTVVGDNANAARDSRNAPNVLIQRQNSLALTKPDANPRQYDGSSSVRRAGSLQILRSQDLSRAADEVKDLHEVLPPSKSVLASSIDILYKKFEEDKACNPPHNEPELDSFIENIEPIKLDAFASSDLGTVQHAGDDGNTCPGHDKPELDAFQENLEIIKQDGYSVPDSGKEDPQESQDNDFFVVDKGIELSPDESVKLEEPIKKAPEDASTVDSTPTLDTTAIQVYSEDGVKNDSLDEPNDSSKDQTVVGEFACEVNRSCTNELLQELESALNSVTELETVALESPDIMEAKSEYTMRKSHSLDDVTESVATEFLSMLGMDHSPGGLSSESEPESPRELLLRQFEKEALNGGFPLFAFDMDDDNEADDGYDVPTESELWNFSEGIESSSLLQDLPKEHLVESQDMKSKQKAQMLEDLETEALMREWGLNEKDFYHSPPKDYAGFGSPIHLPPEEPPTLPPLAEGLGPFLQTKDRGYLRSMNPSLFSNTKNDGNLIMQVSNPVVVPAEMGSGITEVLQCLASVGIEKLSMQAKELMPLEDITGKTMHQIAWEAMPSLEGAERQCNLQHDSTAGHDTTPVRRDLKGTPSGPKSAKSSSSSVANQTGSEFVSLEDLAPLAMDKIEALSIEGLRIQSGMSEEDAPSNIVAQSIGDLSALQGKGIDTSGSLGLEGAAGLQLLNVKDSTDGVDGSVDGIMSLSLTLDEWMRLDSGEIDDVDNISEHTSKLLAAHHANSFDFMRGISKGERRRGKGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVERVFVPPKQKIFSYVSEVRNNNDNDDDESEIVAKVEMKDTKKEEKSSEEEGIPQFKITEVHVAGLKNEPHKKKLWGTSSQQQSGSRWLVANGMGKGKGNNKLPLMKSKAASKSSAPVTTKVPPGETLWSISSRILGSGAKWKELAALNPHIRNPNVIIPNDTIRLS* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2028 1196 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1195 IPR039614 -
Lja6g2028 1196 MobiDBLite consensus disorder prediction 41 83 - -
Lja6g2028 1196 ProSiteProfiles C2 NT-type domain profile. 98 246 IPR019448 -
Lja6g2028 1196 MobiDBLite consensus disorder prediction 269 289 - -
Lja6g2028 1196 MobiDBLite consensus disorder prediction 436 461 - -
Lja6g2028 1196 ProSiteProfiles LysM domain profile. 1147 1195 IPR018392 -
Lja6g2028 1196 MobiDBLite consensus disorder prediction 9 26 - -
Lja6g2028 1196 CDD LysM 1150 1195 IPR018392 -
Lja6g2028 1196 Gene3D LysM domain 1137 1196 IPR036779 -
Lja6g2028 1196 SMART LysM_2 1148 1196 IPR018392 -
Lja6g2028 1196 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 103 249 IPR019448 -
Lja6g2028 1196 MobiDBLite consensus disorder prediction 1 26 - -
Lja6g2028 1196 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1195 - -
Lja6g2028 1196 Pfam LysM domain 1151 1195 IPR018392 -
Lja6g2028 1196 MobiDBLite consensus disorder prediction 810 844 - -
Lja6g2028 1196 MobiDBLite consensus disorder prediction 436 450 - -
Lja6g2028 1196 MobiDBLite consensus disorder prediction 1123 1151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2028 Lja-Chr6 48370158 48374608 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2028 - - mtr:MTR_2g040970 1607.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2028 6 48370158 48374608 Lja6g2028 6 48370158 48374608 ECH
Lja4g1540 4 14336294 14339980 Lja6g2028 6 48370158 48374608 PCT