Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1540 ATGTTGTCTAAAACAAAGAGTGGTGAAGAGCTGAACAAGTTGCTATTAAAAGATGTTGAAGCTATAAACAAAGCTCTGCACCTGGATAAAAGCTCTTCCAGGAATTCAACATCATCACCCAAATCAAAGCCTAAAGAAGACAACAATTCGCGCAAGGATAAGAAGTCCTCATCCATATGGAATTGGAAGCCATTGAAGGCCCTTAACCTTTCCTTCACCAGGAACAGGAAGTTCAATTGCAGTTTTTGTTTCCAAGTCCATTTGATTGAAGGGCTGCCCTCGAGTTTCGATGATTCCAGCATCTGTGTGCATTGGAAGAGGCGCGACGAGCATTTGGTGACCTCTCCAGCCAAGGTGATTCGAGGCGTGGCTGAGTTTCAAGAGGTTTTGACTTACACATGCTCAATCTATGGAAGCAGGAGTGGACCTCACAATTCTGCAAAGTATGAAGCTAAGCACATTTTGCTCTATGCTTCTGTGGTTGGTGCCTCGGAATTTGATTTGGGGAAGCACCGCGTGGATCTCACGAGGTTGCTTCCCCTCACATTGGAGGATCTTGATGAGGAGAAGAGCTCAGGGAGGTGGACTACTAGTTTTAGATTATCAGGAACTGCTAAAGGTGCAGTGATGAATGTGAGTTTTGGGTATGTGGTGGTTGGTGATAACACTTGTGCTACCCCACATGACCTTGGTTCTCCAAATTTATTCACTCCAAGGCAAAATAGTCTGGTTTTGATGGACTCCAATCAGCCTGAGAGGAGCGTGAAGCGTACCGGAAGTTTGCCGAATTTTGCATGGCAGGATTCAATTCAAAGTTTGGATGAGGTGAAGGATCTTCATGAGGTACTGCCATCATCAAAACCAGAACGTACCAACTCTGTAAACATCTTGTTTGTTAATTTTGATGAAGAAAAGACATGCAGTCCTCTGCACAACAAGCCTGAACTTGAATTTAAAGAAAATCTTGAGAAACTGGATGCTTGTTGTACATCTGATACTGAAAGTGAAGAGCAAGAACAAGAAGAGATTCCAGGTAATGAAGGAAAAACATGTAGTCCAGTGCATGACAAACATGAATTTGATGTATTTCAGGAAAAGGAGGAGATAGTTAAGCCAGATGGTCACTCTTCACCTGATTTTGGAAAAGAAGATTTCCTAGAGTGTGAAGGTAGTGAATTTTCTGTTGTTGATCAGGGCATTGAATATTCATCAAATGAACATGATACACCAGATGAATCCATCATAAAACCTGTTGTTGATGCTCATAGTTTTGATAGTAGCCCAACACTAGATGCTGTTAAAGAGGATTCCCAGGATGAACTGAGTGATAGTTATGATGAAAGCTCTACGGGGCATGAAATTTTTGACAAAAAGGATGACTTGTGCACGAAAGAACTTCTCCTGCAAGAGATAGAATCAGCTTTGAATAATGTCTGTGAGTTGGAGACAGTGGCAATGGAATCTCCTAATGTTATGGAAGCCAAATCTGGATGTAAGATGGCAAGGTCACATAGCTTGGATGATGTAGAATCAGTTGCCAGTGAATTTTTTAGTATACTAGGCATAGAACATAGTCCAATGGATTTGAGTTCTGAAAGTGAGCCTGAGTCTCCGAGAGAGCGCCTTTTAAGACAATTTGAGAAGGATGCTTTGTCTGAGGGATTCTCCTTATTTGATTTTGACATGGGCAGTGATGAAGAACAAGAAGAAGAAGAAGATAGTGGCTATGATGCTTCTTTTGGATCTGAGAAGTTGAATTTCCCTAAAGGTATCAAGTTACTATCCTCATTGCAAGATCAGCAGGAAGAGCATCTGATTGAGTCTAAGGATGTGAGGAGCAAGCAGAAGGGCCAGGTGCTAGAAGACTTGGAAACAGAAGCCTTAATGCGTGAATGGGGTTTGAATGAGAAGGCTTTTCAGCACTCTCCACCTAAAGACTCTTCTGGTTTTGGAAGTCCAATTCATCTACTACCTGAAAAGCCTGTCATATTACCTTCTCTAGCAGAAGGGTTAGGTCCTTCTCTTCAGACAAAAAATGGGGGGTTTCTACGGTCTATGAATCCCGCACTTTTTAAGAATGCGAAAAGTGGTGGGAGCTTAATCTTGCAGGTTTCCAACCCTGTTGTGGTTCCTGCAGAAATGGGTTCAGGGATAACGGAGATTTTGCAGTGTTTGGCTTCACTCGGAATTGAAAAGCTTTCGATGCAGGCTAACAAGTTAATGCCTCTGGAAGATATCACAGGGAAGACAATGCAACAAATATCATGGGAAGCTATGCCAGTCTTAGAGGGAACAGACAGGCAAAGCTATTTGCGGCATGATTTGGTAACAGGACAAGATTCTACTCGCATACTAACAGGCTTGAAAGGAACATTATCTGGAGTCAGGTCTGGTAATAAGTTTAGTTCAAGTTCAGTTGGTAACCAGATAGGGCTTGTTTCATTGGAAGATCTTGCTCCATTAGCTATGGATAAAATTGAAGCACTTTCATTGGAGGATGCACCATCAAACATCATTGCTCAATCCTTTGGAGATATTTCAACTCTCCAAGACAAAGGGGTTAATGTTAGTGGCTCATGTGGCTCAGATGGAGCTGCTGCATTGCAGTTGTTGGATATGAAAGACAGCAACACTAGTATTGATGGGATAATGGGTCTATCATTGAGACTTGATGAATGGATGAAGCTGGATTCAGGTCAGATTGATGATATCGATAATATAAGCGAGCATACTTCAAAGCTACTTGCTGCCCATCATCCTGTTGGAACACCAATGCTTGCTCTTGTCCAAGTTGAGAGAGTGTTTGTTCCACCAAAGCAAAAAATCTACATGAGAGTGTCTGAGGTCAGGAATGATAATGACAAGGAGGATGAGTGTGAAATAGTAGCAAAAGTGGAGTTGAAGGACGACAAAGAGGATAAAAGTTCTAAAGAGGAGGTCATTCCTCAGTTCAGAATTACAGAAATCCATCAACAATCAGGTTCTCGCTGGTTGCTTGCTAATGGAATGGGAAAGGGTAATAAGAACAATCAAATAGTGAAATCAAAGGCTGCATCTAAATCTAGTGTTCCGGTCATCACAAAGGTGCAACCTGGTGACACATTGTGGAGCATATCATCTCGAATTTATGGTACCGGAGCGAAATGGAAGGAATTGGTAGCACTAAATCCACATATAAGAAATCCCAATATCATTATACGGAATGAAACATTAAGAATACGTTGA 3225 0.4177 MLSKTKSGEELNKLLLKDVEAINKALHLDKSSSRNSTSSPKSKPKEDNNSRKDKKSSSIWNWKPLKALNLSFTRNRKFNCSFCFQVHLIEGLPSSFDDSSICVHWKRRDEHLVTSPAKVIRGVAEFQEVLTYTCSIYGSRSGPHNSAKYEAKHILLYASVVGASEFDLGKHRVDLTRLLPLTLEDLDEEKSSGRWTTSFRLSGTAKGAVMNVSFGYVVVGDNTCATPHDLGSPNLFTPRQNSLVLMDSNQPERSVKRTGSLPNFAWQDSIQSLDEVKDLHEVLPSSKPERTNSVNILFVNFDEEKTCSPLHNKPELEFKENLEKLDACCTSDTESEEQEQEEIPGNEGKTCSPVHDKHEFDVFQEKEEIVKPDGHSSPDFGKEDFLECEGSEFSVVDQGIEYSSNEHDTPDESIIKPVVDAHSFDSSPTLDAVKEDSQDELSDSYDESSTGHEIFDKKDDLCTKELLLQEIESALNNVCELETVAMESPNVMEAKSGCKMARSHSLDDVESVASEFFSILGIEHSPMDLSSESEPESPRERLLRQFEKDALSEGFSLFDFDMGSDEEQEEEEDSGYDASFGSEKLNFPKGIKLLSSLQDQQEEHLIESKDVRSKQKGQVLEDLETEALMREWGLNEKAFQHSPPKDSSGFGSPIHLLPEKPVILPSLAEGLGPSLQTKNGGFLRSMNPALFKNAKSGGSLILQVSNPVVVPAEMGSGITEILQCLASLGIEKLSMQANKLMPLEDITGKTMQQISWEAMPVLEGTDRQSYLRHDLVTGQDSTRILTGLKGTLSGVRSGNKFSSSSVGNQIGLVSLEDLAPLAMDKIEALSLEDAPSNIIAQSFGDISTLQDKGVNVSGSCGSDGAAALQLLDMKDSNTSIDGIMGLSLRLDEWMKLDSGQIDDIDNISEHTSKLLAAHHPVGTPMLALVQVERVFVPPKQKIYMRVSEVRNDNDKEDECEIVAKVELKDDKEDKSSKEEVIPQFRITEIHQQSGSRWLLANGMGKGNKNNQIVKSKAASKSSVPVITKVQPGDTLWSISSRIYGTGAKWKELVALNPHIRNPNIIIRNETLRIR* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1540 1074 Gene3D LysM domain 1016 1074 IPR036779 -
Lja4g1540 1074 SUPERFAMILY LysM domain 1026 1073 IPR036779 -
Lja4g1540 1074 MobiDBLite consensus disorder prediction 27 57 - -
Lja4g1540 1074 CDD LysM 1028 1073 IPR018392 -
Lja4g1540 1074 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 75 220 IPR019448 -
Lja4g1540 1074 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 919 IPR039614 -
Lja4g1540 1074 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 920 1073 IPR039614 -
Lja4g1540 1074 MobiDBLite consensus disorder prediction 432 450 - -
Lja4g1540 1074 MobiDBLite consensus disorder prediction 427 450 - -
Lja4g1540 1074 Pfam LysM domain 1028 1064 IPR018392 -
Lja4g1540 1074 SMART LysM_2 1026 1074 IPR018392 -
Lja4g1540 1074 ProSiteProfiles LysM domain profile. 1025 1073 IPR018392 -
Lja4g1540 1074 MobiDBLite consensus disorder prediction 40 57 - -
Lja4g1540 1074 ProSiteProfiles C2 NT-type domain profile. 70 218 IPR019448 -
Lja4g1540 1074 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 919 - -
Lja4g1540 1074 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 920 1073 - -
Lja4g1540 1074 MobiDBLite consensus disorder prediction 332 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1540 Lja-Chr4 14336294 14339980 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1540 - - lja:Lj4g3v2179220.1 1993.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1540 4 14336294 14339980 Lja4g1540 4 14336294 14339980 ECH
Lja4g1540 4 14336294 14339980 Lja6g2028 6 48370158 48374608 PCT