Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2018 ATGGCTTCCACTTCTGCAGTTTCAATGGCAATGCCACTAACTCACGCCAGCCAGCAGAGGGTGGTGCCAACCTCTGAGGCATTCTTCAAGCCAATGCATCTTCGGTCCTCAAGGGCTGCAGCAGCATCAAAATCAAGTGGAAGGTTTCAAGTCAGGGCCTCCATGAAGGAGAAAGTTGTGACAGGGCTCACAGCAGCTGCAATGACCGCCTCAATGATGGTTCCTGATGTGGCTGAAGCTGCCGTTTCACCGTCTCTCAAGAACTTCTTGCTCAGCATCGCGGCTGGTGGAGTTGTGCTTGTAGTCATTATTGGTGCTGTGGTTGGTGTTTCCAATTTCGATCCCGTCAAGCGAGGCTGA 360 0.5222 MASTSAVSMAMPLTHASQQRVVPTSEAFFKPMHLRSSRAAAASKSSGRFQVRASMKEKVVTGLTAAAMTASMMVPDVAEAAVSPSLKNFLLSIAAGGVVLVVIIGAVVGVSNFDPVKRG* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2018 119 Gene3D Single helix bin 81 119 - -
Lja6g2018 119 PANTHER OS07G0673550 PROTEIN 1 118 - -
Lja6g2018 119 Pfam Photosystem II reaction centre X protein (PsbX) 82 118 IPR009518 GO:0009523|GO:0015979|GO:0016020
Lja6g2018 119 PANTHER EXPRESSED PROTEIN 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2018 Lja-Chr6 48269430 48269789 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2018 - - gmx:100306291 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2018 6 48269430 48269789 Lja6g2018 6 48269430 48269789 ECH
Lja4g1532 4 14291662 14292531 Lja6g2018 6 48269430 48269789 PCT