Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2014 ATGTCGTCGGCGGCATCACACGCCGTTGAGCACATCGTTCTCATCAGGGTCAAAGACGATGTCGAGCCCTCTAAGGTCAACGACATACGCTCCCTCGCGACATTGGACCAGGTCCGCCACCTCACGGTGGGGCCAGTTCTCCGCAGCCACGCAACCACCACCAACGCCACGTCAGACCTCCGCTTCACCCACTTGCTCCACAGCCGCTACGACTCAAAGGAGGATCTCGAAGCCTACAATGCGCACCCTCGCCACCTCGGCGCCGTCAGGGGCTCCCTCTTCCCTATCTGCGGCGACCTCATGGCCGTCGATTGGTTCGGCGACGAAGACGCGCTTCCCCCGCACCCGACGCCGGGGTCTGCCATCCGGGTGAGCTTCTTGAAACTCAAGGACGGCGCCGGCGGCGAAGTTAAGGACGAGGTTTTGGATGCTGTCCGAAAAATGAGGGGCGGTGGCGGGGCGATTAGCGGCTTCTCTTGCGGCGGAAACTTCTCGCCGGAGTGGGCGAAGGGTTTATCGATCGCTTCGCTGGCGGTTTTTCCGGGAAGGAAGGAATTGGAGGAAGTGGATCCGAATGAGTGGTTGGTTAAGGTTAGGGAGCATTTGGAAAGTGTGGTGGTGGTTGATTATGTGCTTCCTTTAGAGTAA 648 0.5957 MSSAASHAVEHIVLIRVKDDVEPSKVNDIRSLATLDQVRHLTVGPVLRSHATTTNATSDLRFTHLLHSRYDSKEDLEAYNAHPRHLGAVRGSLFPICGDLMAVDWFGDEDALPPHPTPGSAIRVSFLKLKDGAGGEVKDEVLDAVRKMRGGGGAISGFSCGGNFSPEWAKGLSIASLAVFPGRKELEEVDPNEWLVKVREHLESVVVVDYVLPLE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2014 215 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN UP3 2 213 - -
Lja6g2014 215 SUPERFAMILY Dimeric alpha+beta barrel 122 212 IPR011008 -
Lja6g2014 215 ProSiteProfiles Stress-response A/B barrel domain profile. 9 105 IPR013097 -
Lja6g2014 215 ProSiteProfiles Stress-response A/B barrel domain profile. 121 215 IPR013097 -
Lja6g2014 215 Gene3D - 117 212 - -
Lja6g2014 215 Gene3D - 8 106 - -
Lja6g2014 215 SUPERFAMILY Dimeric alpha+beta barrel 8 106 IPR011008 -
Lja6g2014 215 SMART Dabb_2 9 107 IPR013097 -
Lja6g2014 215 SMART Dabb_2 121 212 IPR013097 -
Lja6g2014 215 PANTHER - 2 213 IPR044662 -
Lja6g2014 215 Pfam Stress responsive A/B Barrel Domain 123 211 IPR013097 -
Lja6g2014 215 Pfam Stress responsive A/B Barrel Domain 9 105 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2014 Lja-Chr6 48239277 48240084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2014 - - lja:Lj6g3v1201360.1 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2014 6 48239277 48240084 Lja6g2014 6 48239277 48240084 ECH
Lja4g1528 4 14272631 14274047 Lja6g2014 6 48239277 48240084 PCT