Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1528 ATGCAGTGTTTAAGACTGAAACCGCCGCTATCGTTTCCAGTCACATTCTCACCTTCCAAACACCTCCGACGAAATCACCTACCGGCGTGGTCCTCAACCCGATCTCCGATCAAGAGCATGTCAACCACCGTGGAGCACATCGTCCTCTTCAAGGTCAAAGACGACACCGACCCCTCCAAGGTCACCGCCATGGTCAACGGCCTCAGCTCCCTCATCTCCCTAGACCACGTCCTCCACCTCACGGTGGGCCCAATCCTCCGCAACCGCTCCACCTCCTTGACCTTCACCCACATGCTCCACAGCCGCTATAACTCCAAGGAAGATCTCGACGCCTACTCCGCTCACCCCAGCCACCTCGGCGTCGTCAGGGGGAATGTCCTCCCCATCATCGACGACCTCATGGCCGTCGATTGGGTCGCCGAAGATCTCCGCGGCGATATCGTCACGCCGCAGGGGTCGGCGATGCGACTTACCTTGTTGAAATTGAAGGAGAATGCGGATAGCGGTAAGGTTCTGGGGGTTATCAGAGAAATTCCGGAGAGCTTCAAGCAGATTAGTCAGCTGAGCTGCGGCGAGAATTTCTCCCCGGCGAGAGCTAAGGGCTTCTCGGTTGCTTCCCTGGCGGTTTTTCCTGGACAGGGGGAGTTGGAGGATGTGGATTCGAATGGGGAGGTGGTGAGTTATCATAAGGATAAGGTTAGGGATCTGCTAGAGAGTGTGGTTGTGGTTGATTATGTGGTGCCGCCGCCGCCTGCTCAGTCTGCTAGCCTTTGA 774 0.5672 MQCLRLKPPLSFPVTFSPSKHLRRNHLPAWSSTRSPIKSMSTTVEHIVLFKVKDDTDPSKVTAMVNGLSSLISLDHVLHLTVGPILRNRSTSLTFTHMLHSRYNSKEDLDAYSAHPSHLGVVRGNVLPIIDDLMAVDWVAEDLRGDIVTPQGSAMRLTLLKLKENADSGKVLGVIREIPESFKQISQLSCGENFSPARAKGFSVASLAVFPGQGELEDVDSNGEVVSYHKDKVRDLLESVVVVDYVVPPPPAQSASL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1528 257 PANTHER - 31 254 IPR044662 -
Lja4g1528 257 SMART Dabb_2 156 247 IPR013097 -
Lja4g1528 257 SMART Dabb_2 44 140 IPR013097 -
Lja4g1528 257 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN UP3 31 254 - -
Lja4g1528 257 Gene3D - 36 142 - -
Lja4g1528 257 Pfam Stress responsive A/B Barrel Domain 44 139 IPR013097 -
Lja4g1528 257 Pfam Stress responsive A/B Barrel Domain 156 247 IPR013097 -
Lja4g1528 257 ProSiteProfiles Stress-response A/B barrel domain profile. 44 138 IPR013097 -
Lja4g1528 257 ProSiteProfiles Stress-response A/B barrel domain profile. 154 245 IPR013097 -
Lja4g1528 257 Gene3D - 154 250 - -
Lja4g1528 257 SUPERFAMILY Dimeric alpha+beta barrel 40 143 IPR011008 -
Lja4g1528 257 SUPERFAMILY Dimeric alpha+beta barrel 153 250 IPR011008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1528 Lja-Chr4 14272631 14274047 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1528 - - mtr:MTR_4g125530 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1528 4 14272631 14274047 Lja4g1528 4 14272631 14274047 ECH
Lja4g1528 4 14272631 14274047 Lja6g2014 6 48239277 48240084 PCT