Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2009 ATGACTGGAATTGCAAAGGAGGAAGAGTCAGGGAGTCCTAGTTGGGGTGCTTCTTTTTTTACACAGACAACAGAGGATGTAGCTAAAGCTGTCGCTGCTGCTATGAATTCTGAAAGGCCATCTGTGATATATTCATCTAAAACTGATCATGGGGGTAGTCAGCTTCAAAGGCTGCAGAGTCAAGTTACTAAATTGATAAAAGGATTTTCTGGCACTTCTGAAGTTAAATATGCAAATTACAATCCAGAAATCCTGACAAGTCAGAAGCGTCAATGGGCTGCCAACTTTCATTTGCAGTACATGGATCATAAGTCTTGGAAGGAGCCATCAAGGCTGTTTGAAAGCATGGTGGTTGTTGGACTTCATCCTAATTGTGATATTCAGGCACTGCAAAGACAATATATTGATAGAAAGTCTGAAGGCTCTGGTAAATTGAGAAGTGCACTTGGTTACCATAATCAATCCCGTGTAGAGCCTAATCTTGAACCTCAGGTCTTATTTGCTTACCCTCCAGACAAGCAGCTGCCTCTTAAAGATAAGGATCTTTTTTCTTTCTGCTTCCCTGGAGGCCTGGAGGTTAATGCTGTGGAGAGAACCCCTTCCATGAGCGAGTTGAATGAAATTCTTTTTGGGCAGGAACACCTTAAACAAAGGGATCTGTCTTTTGTATTTAGGTTACAGGGTGCTGATAATTCAACACTTTACGGATGCTGTGTCCTAGTTGATGAGCTAGTGCAAAAACCATCCGGATTGCTCTCCCTGATTTTGGACAAGCAGTCATCTCACTCTTCATTGAGACGCCATATAATAACCACAAAGAGATGTTACTGCATTCTTTCAAGGCTCCCATTTTTTGAATTGCACTTTGGTGTATTGAACAGCATCTTCATGCAAGAAAGGTTAGAGTGGTTGACAAGCAGTGTTGAAGATTTAAATTTAGAAATTGTTGAAGGTAGTTATGATGAAGAAAATTCAGGGGAAAATTCAGAGTGTGTGTTGATGAATGATAGACCAACAGAAGACAGAGATGACGATAATCCAACAATTTCTCAATCAAAGCTAGGAAGTTCCCTACCCGAAAACATTGAAGGTGATAGTAGTCATCTAGAGAAACAAATGGTTAATGAGGAGCTGCATACATTTAAGGAGGGAGTCAATAATGACACTGTTGTCCCAATTGATCCTGAACCTGATATAAAAACTGCCAAAGAAGAATCTGGCTGTAAAAATGCTGAAGATAGTGATCTGTGTCGAGATGCTTTTGTTACAAACAAACAGTCAGAAGATAGGCGCTTACCAAATGCTATTTTGCCACTCTTGCGCTATTGCCAGTATGAAAGCTCTGAATCTTCCTGCAGTATTCAAGGTTCACCTTGTGAAGACAGGAACTTTAGGAGTGATGCTGATGATACCGAGACAGAAGAGGCTTCAATCTCGGGCCAAGAGGATTTAAATGACCTACATGATATTCTTGAATGGGCTAAGGCAAATAACTGTGGACCGTTACAGATTATAAGCGAGTATTATCGTTTAAGTGTTCCTGCAAGGGGCTCAGCACTTACCTTCCGTCCTTTGGAGCACCTTCATCACCTGGAATATCACAGACCAGCTGAGACAGTTCTTCATCTTGCTGGTTCAACTGTTGATTTGAAATCTTGCAGTACGCGTCTTGAATTTGCTGAGGCACATATCTCCCTTCTGGCTGAGGAGGAGGCAACTTCATTATCTATATGGGCTGTAGCGTGCATGTGTGGTACCTTGAGGCTTGAAAATGTTTTAACATTGTTTGCAGGAGCTCTACTGGAGAAGCAGATAGTGATTGTCTGTTCTAATTTGGGAATCCTGTCTGCTTCAGTTTTATCAGTTATTCCACTAATCCGGCCCTACCAATGGCAAAGCCTGCTTATGCCGGTTTTACCAAATGACATGCTTGAGTTTCTGGATGCTCCTGTCCCTTACATAGTTGGTATCAGGAACAAGACCAATGAAATTCAGTCAAAGTTAACCAATGTTATTTTGGTTGATGCCAATAAAAATCAGGTGAAGTCACCAACGGTACCTCAACTGCCAAGACAGAAAGAGCTAATCTCTTCTTTACGTCCTTATCATGCAACTCTTGTGGGAGAAAGTTACTTGGGTAGGAGAAGACCGGTGTACGAATGCACGGAAGTGCAGACAGAAGCTGCCAAAGGGTTCTTATCGGTGTTAAGGTCTTATTTGGATTCCCTTTGCGGTAACATCCGTTCTCATACGATAACCAATGTACAATCCAATGACGATAAGGTATCCTTGCTTTTGAAGGAGAGTTACATTGACTCATTCCCTTATCGTGATCGGGCTTTCATGAAGCTTTTTGTGGATACACAGCTCTTCTCTGTGCACACAGATCTTGTTCTCTCATTCTTCCAAAAGGAATAG 2418 0.4169 MTGIAKEEESGSPSWGASFFTQTTEDVAKAVAAAMNSERPSVIYSSKTDHGGSQLQRLQSQVTKLIKGFSGTSEVKYANYNPEILTSQKRQWAANFHLQYMDHKSWKEPSRLFESMVVVGLHPNCDIQALQRQYIDRKSEGSGKLRSALGYHNQSRVEPNLEPQVLFAYPPDKQLPLKDKDLFSFCFPGGLEVNAVERTPSMSELNEILFGQEHLKQRDLSFVFRLQGADNSTLYGCCVLVDELVQKPSGLLSLILDKQSSHSSLRRHIITTKRCYCILSRLPFFELHFGVLNSIFMQERLEWLTSSVEDLNLEIVEGSYDEENSGENSECVLMNDRPTEDRDDDNPTISQSKLGSSLPENIEGDSSHLEKQMVNEELHTFKEGVNNDTVVPIDPEPDIKTAKEESGCKNAEDSDLCRDAFVTNKQSEDRRLPNAILPLLRYCQYESSESSCSIQGSPCEDRNFRSDADDTETEEASISGQEDLNDLHDILEWAKANNCGPLQIISEYYRLSVPARGSALTFRPLEHLHHLEYHRPAETVLHLAGSTVDLKSCSTRLEFAEAHISLLAEEEATSLSIWAVACMCGTLRLENVLTLFAGALLEKQIVIVCSNLGILSASVLSVIPLIRPYQWQSLLMPVLPNDMLEFLDAPVPYIVGIRNKTNEIQSKLTNVILVDANKNQVKSPTVPQLPRQKELISSLRPYHATLVGESYLGRRRPVYECTEVQTEAAKGFLSVLRSYLDSLCGNIRSHTITNVQSNDDKVSLLLKESYIDSFPYRDRAFMKLFVDTQLFSVHTDLVLSFFQKE* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2009 805 MobiDBLite consensus disorder prediction 334 348 - -
Lja6g2009 805 Pfam DENN (AEX-3) domain 568 678 IPR001194 -
Lja6g2009 805 MobiDBLite consensus disorder prediction 319 365 - -
Lja6g2009 805 SMART DENN_cls 271 679 IPR001194 -
Lja6g2009 805 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 1 805 - -
Lja6g2009 805 Gene3D - 100 311 - -
Lja6g2009 805 ProSiteProfiles Tripartite DENN domain profile. 143 805 IPR037516 -
Lja6g2009 805 MobiDBLite consensus disorder prediction 387 407 - -
Lja6g2009 805 Gene3D - 576 741 IPR043153 -
Lja6g2009 805 PANTHER DENN (AEX-3) DOMAIN PROTEIN 1 805 - -
Lja6g2009 805 MobiDBLite consensus disorder prediction 349 363 - -
Lja6g2009 805 Pfam uDENN domain 163 240 IPR005113 -
Lja6g2009 805 MobiDBLite consensus disorder prediction 450 480 - -
Lja6g2009 805 SMART uDENN_cls 109 242 IPR005113 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2009 Lja-Chr6 48142526 48153857 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2009 - - lja:Lj6g3v1191160.3 1496.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2009 6 48142526 48153857 Lja6g2009 6 48142526 48153857 ECH
Lja4g1523 4 14197183 14209296 Lja6g2009 6 48142526 48153857 PCT