LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g1523	ATGGCAAAGGAAGAAGAGGCAGGTAGTCCTAGTTGGGCTGCTTCTTTTTTCACGCAGACGACAGGAAATGTGGCTAGAGTTTCTGCTGCTGCTGCTGCTGTTAGTTCTCCAATATCGGCAGGGGTGCATTCATCAAAAGATGATACTAATGGTAGCAAACTTCAAAGACTGCAGTATCAAGTAACAAAAATGTTAAAGGGCTTTTCACGCCCTCCTGATGTTGAAACCACAAATTACAACCCTGAAATTCTTACTAGTCTGAAGCGTCAATGGGCGGCTAACTTCCAGTTGCAACATATGGACAATCAGTCTTGGAAGGAGCCCTCACGACTGTTTGAGAGCATGGTGGTTGTTGGACTTCATCCTAATAGTGATGTTCAGGCACTGCAAAGGCAATATGTTGACAGAGAGTTTGAAGGATCTGGTAAATTGAGGAGTGTACTTAGTTATCAGAATCAATCTCGCGTAGAACCCAATATTGAACCTCAGGTCTTATTTGTTTACCCTCCAGAAAAACAGCTGCCTCTTAAATGCAAGGATCTTCTTTCTTTCTGTTTCCCTGGTGGCTTGGAGGTCCGTGCCGTTGAGAGAACCCCTTCCATGAGTGAGTTGAAGGAAATCATCTTTGGGCAGGAACACCTTAAACAAAGGGATCTTTCATTTGTATTCAGGTTACAGGGTGCTGACAACTCAATACTATATGGGTGTTGTGTCCTAGTTGAAGAACTAGTGCAAAAGCCCTCTGGATTGCTCTCTCTGATTCCTGATAAGCAGCCATCTTACCCTTCTTTGAGACGTCATGCATTAATCACTCAGAGATGTTACTGCATTCTTTCAAGACTTCCATTTTTTGAATTGCACTTTGGTGTATTAAATAGCATCTTCACACAAGAAAGGCTTGAGTGGTTGACAAAAAGTATTGGAGATTTAAATTTAGAAGTTTTTGAAGGTAACTATGAAGATGAAAACTCAGATAGTGATCCCGAGAGTGTGGTGGTGGGTGATGGACCCATTGAAGACAGATTTGATGGAAATTCAATAATTTCTCAATCAAGAGGAGAAAATTCTGCACCTGAAAACAATGTGAGTGATGGTTATCCAGAGAACCTAATGGCTAGTGGGGAGGTGCAAACATATAATGAGAGTTATGATAATGTTGTGCCCGCCGAGCCTGAAACTGATAGGAGTAGGACCGCAGTCAAAGAAGAGTCTAGCCCTTCAAATTCTAGAGATAGTGATGAGTATGAAGATGGACCCATAGAAGACAGATTTGATGGAAATTCAATAATTTCTCAATCAAGAGGCGAAAATTCTGCACCTGAAAACAATGTGAGTGATGGTTTTCCAGAGAACCTAATGGTTAGTGGGGAGGTGCAAACATATAATGAGAGAATCAACTATGATAATGTTGTACCCGCTGAGCCTGAAACTGATAGGAGTAGAACAGCAGTCAAAGAAGAGTCTAGCCCTTCAAATTCTAGAGATAGTGATCAGTATGGAGATGCTTTAGAAACCAACAAAAAGTCAAAAGATAGTCATTTGCCTCATGCTATTTTGCCCCTTCTACGCAATTGCCAGTATGAAAGCTCTGAATCTTCCTGCAGCATTCAAGGATCACCTTGTGAAGACAAAAATTTTAGGAGTGAAATTGATGATAATGAGACAGAAGATGCATCTTTCTCTGGCCAAGAGGATATAAATGACTTGAATGATATTCTTCAATGGGCTAAGGAACATAACCATGGACCTCTACAAATTATAAGTGAGTATTATCGCTTAAGTTGCCCAGCCAGGGGCTCAACACTTACGTTTCATCCTTTGGAACACTTGCATCCCTTGGAGTATCATAGACCAGCAGGGACAGTTCCACATCTGGTTGGTTCAACTGTTGATTTGAAAGCTTGCAATGCTGGGCAGGAGTTAGCTAATGCCCATAATTCTCTTCTGGTGGAAGACGCAACTGCATTATCGATATGGACTGTAGCTTGCATATGCGGTATCTTGAGACTTGAAAATGTGTTAACATTCTTTGCCGCAGTTCTGCTAGAGAAGCAGATAGTTGTTCTCTCTTCGAATTTGGGAATCCTATCTGCTTCAGTTTTATCAGTTATTCCACTAATCCAGCCTTACCGATGGCAAAGCCTACTAATGCCAGTTTTACCAAGTGACATGCATGAGTTTTTAGATGCACCTGTCCCTTATGTGGTTGGTATCACGAATAAGAACAGTGAAGTTCAGTCAAAGTTTGCCAACGTTATACTGGTTGATGCTGATAGAAACCAGGTGAAGTCACCAACAATACCACAACTTCCAAGACAGAAAGAGCTAGTCTCTTCTTTACGTTCCTATCATGCAACTCTTGTAGGCGAAAGTTACTTGGGGAGGAGAAGGCCAGTGTATGAGTGCACAGAAGTGCAGATTGAAGCTGCAAAGGGGTTCCTTTCGGTGTTAAGGTCTTACTTGGATTCTCTTTGCTATAACATCCGTTCCCACACGATTACTAATGTACAATCCAATGATGATAAGGTATCTTTGCTTTTGAAGGAGAGTTTCATTGACTCATTCCCTTACCGTGATCGAGCTTTTATGAAGCTTTTCGTGGATACACAGCTTTTTTCAGTACATACAGACCTTGTTCTCTCTTTCTTACAAAAGGAATAG	2661	0.4145	MAKEEEAGSPSWAASFFTQTTGNVARVSAAAAAVSSPISAGVHSSKDDTNGSKLQRLQYQVTKMLKGFSRPPDVETTNYNPEILTSLKRQWAANFQLQHMDNQSWKEPSRLFESMVVVGLHPNSDVQALQRQYVDREFEGSGKLRSVLSYQNQSRVEPNIEPQVLFVYPPEKQLPLKCKDLLSFCFPGGLEVRAVERTPSMSELKEIIFGQEHLKQRDLSFVFRLQGADNSILYGCCVLVEELVQKPSGLLSLIPDKQPSYPSLRRHALITQRCYCILSRLPFFELHFGVLNSIFTQERLEWLTKSIGDLNLEVFEGNYEDENSDSDPESVVVGDGPIEDRFDGNSIISQSRGENSAPENNVSDGYPENLMASGEVQTYNESYDNVVPAEPETDRSRTAVKEESSPSNSRDSDEYEDGPIEDRFDGNSIISQSRGENSAPENNVSDGFPENLMVSGEVQTYNERINYDNVVPAEPETDRSRTAVKEESSPSNSRDSDQYGDALETNKKSKDSHLPHAILPLLRNCQYESSESSCSIQGSPCEDKNFRSEIDDNETEDASFSGQEDINDLNDILQWAKEHNHGPLQIISEYYRLSCPARGSTLTFHPLEHLHPLEYHRPAGTVPHLVGSTVDLKACNAGQELANAHNSLLVEDATALSIWTVACICGILRLENVLTFFAAVLLEKQIVVLSSNLGILSASVLSVIPLIQPYRWQSLLMPVLPSDMHEFLDAPVPYVVGITNKNSEVQSKFANVILVDADRNQVKSPTIPQLPRQKELVSSLRSYHATLVGESYLGRRRPVYECTEVQIEAAKGFLSVLRSYLDSLCYNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRAFMKLFVDTQLFSVHTDLVLSFLQKE*	887

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g1523	886	MobiDBLite	consensus disorder prediction	344	369	-	-
	Lja4g1523	886	ProSiteProfiles	Tripartite DENN domain profile.	382	886	IPR037516	-
	Lja4g1523	886	Pfam	uDENN domain	162	239	IPR005113	-
	Lja4g1523	886	Gene3D	-	99	307	-	-
	Lja4g1523	886	MobiDBLite	consensus disorder prediction	426	450	-	-
	Lja4g1523	886	Pfam	DENN (AEX-3) domain	663	760	IPR001194	-
	Lja4g1523	886	MobiDBLite	consensus disorder prediction	388	423	-	-
	Lja4g1523	886	PANTHER	SUPPRESSION OF TUMORIGENICITY 5 ST5	1	417	-	-
	Lja4g1523	886	PANTHER	SUPPRESSION OF TUMORIGENICITY 5 ST5	417	886	-	-
	Lja4g1523	886	MobiDBLite	consensus disorder prediction	465	511	-	-
	Lja4g1523	886	Gene3D	-	657	822	IPR043153	-
	Lja4g1523	886	PANTHER	DENN (AEX-3) DOMAIN PROTEIN	1	417	-	-
	Lja4g1523	886	PANTHER	DENN (AEX-3) DOMAIN PROTEIN	417	886	-	-
	Lja4g1523	886	SMART	uDENN_cls	108	241	IPR005113	-
	Lja4g1523	886	MobiDBLite	consensus disorder prediction	387	450	-	-
	Lja4g1523	886	SMART	DENN_cls	270	760	IPR001194	-
	Lja4g1523	886	MobiDBLite	consensus disorder prediction	474	492	-	-
	Lja4g1523	886	MobiDBLite	consensus disorder prediction	319	369	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g1523	Lja-Chr4	14197183	14209296	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g1523	-		-	lja:Lj4g3v2180400.2	1226.46

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g1523	4	14197183	14209296	Lja4g1523	4	14197183	14209296	ECH
	Lja4g1523	4	14197183	14209296	Lja6g2009	6	48142526	48153857	PCT