Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1983 ATGGTAGAGAATCCAGGGCCACTGGCTCGGTTTCAAGCACCCTTTACTTCTCACAGGACCCTTTTTGCGTTTCTGTGTGTTGCTACGTTTGCTTCTGTTTTTCTGTGGCAGGGGAATGAGATTAATGGGTTTTTGGTGTTGGGTGGTGTCGTTTCGGGGTGGACGCCGCCGTTGCTGCGGCCGGTGGCGTTCAATTTGACGGATTTTGGTGGGGTTGGTGATGGGGTTACTTTGAATACTGTGGCCTTTGAGAGGGCTGTTTCTGCTATTTCCAAGTTGAGGGAGAAGGGTGGTGGCCAGTTGAATGTGCCACCTGGTCTTTGGCTTACTGCACCATTTAATCTCACCAGTCATATGACTCTTTTTCTAGCTCAAGATGCTGTCATTCTTGGAATTCAGGATGAAAAGTATTGGCCATTGATGCCTGCATTGCCTTCATATGGGTATGGTAGGGAGCACCCTGGGCCTCGATATGGCAGTTTGATTCACGGTCAAAATCTTAGAGATGTTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAATCATGGTGGACAAAATATCGCGAGAAGCTTCTGAACCACACAAGAGGGCCACTTGTTCAAATCATGTGGTCTAGTGACATTGTGATCGCAAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAGAATGTTACAATAAAAAATGTCACCATATTGGCTCCTGTATATCATGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAAGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGGTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCCAAGAATATAATAATCCGAAACCTTGTGGTTCGCTCTAATGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCACAGTGGAGAACGTTCTTGTATGGGAATCTCGGCGTGCCATAAGGATCAAGACTGCACCTGGAAGAGGTGGATATGTGCGACAAATAACTTACCGGAATCTAACGTTCAACAACGTCCGTGTTGGAATTGTTATCAAGACAAATTACAATGAACACCCTGATGCTGGATATGATCCCCTGGCATTTCCAGTACTTAGTGACATAAGTTTCATCAATGTGCGTGGCCAGGGAGTTCGCGTGCCGGTACGTATTGAAGGTAGTAAAGAAATTTCAGTTAGAAATGTGACTTTCCAGGACATGAATGTTGGCATAACCTACAAGAAGAAGCATATCTTCCAGTGTGCCTTTGTCGAAGGTCGGGTAATAGGTACTATCTTTCCTGCTCCCTGTGGGAACTTTGATCAATACAATGAACAAGGGGAGCTGGTTAAGCATGCTGTGTCACAGAATGTAACAGATATAGATTATGAAATTTGA 1449 0.4451 MVENPGPLARFQAPFTSHRTLFAFLCVATFASVFLWQGNEINGFLVLGGVVSGWTPPLLRPVAFNLTDFGGVGDGVTLNTVAFERAVSAISKLREKGGGQLNVPPGLWLTAPFNLTSHMTLFLAQDAVILGIQDEKYWPLMPALPSYGYGREHPGPRYGSLIHGQNLRDVVITGHNGTINGQGQSWWTKYREKLLNHTRGPLVQIMWSSDIVIANITLRDSPFWTLHPYDCKNVTIKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSKNIIIRNLVVRSNVSAGISIGSEMSGGVSNVTVENVLVWESRRAIRIKTAPGRGGYVRQITYRNLTFNNVRVGIVIKTNYNEHPDAGYDPLAFPVLSDISFINVRGQGVRVPVRIEGSKEISVRNVTFQDMNVGITYKKKHIFQCAFVEGRVIGTIFPAPCGNFDQYNEQGELVKHAVSQNVTDIDYEI* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1983 482 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 14 480 - -
Lja6g1983 482 PANTHER PECTIN LYASE-RELATED 14 480 - -
Lja6g1983 482 SUPERFAMILY Pectin lyase-like 55 455 IPR011050 -
Lja6g1983 482 Pfam Glycosyl hydrolases family 28 159 441 IPR000743 GO:0004650|GO:0005975
Lja6g1983 482 Gene3D - 50 443 IPR012334 -
Lja6g1983 482 SMART pbh1 384 406 IPR006626 -
Lja6g1983 482 SMART pbh1 293 315 IPR006626 -
Lja6g1983 482 SMART pbh1 231 258 IPR006626 -
Lja6g1983 482 SMART pbh1 321 342 IPR006626 -
Lja6g1983 482 SMART pbh1 411 432 IPR006626 -
Lja6g1983 482 SMART pbh1 350 371 IPR006626 -
Lja6g1983 482 SMART pbh1 259 280 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1983 Lja-Chr6 47797122 47801594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1983 15 482 Glycoside Hydrolase AT3G42950 74.167 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1983 - - gmx:100800910 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1983 6 47797122 47801594 Lja6g1983 6 47797122 47801594 ECH
Lja4g1498 4 13861449 13866652 Lja6g1983 6 47797122 47801594 PCT