Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1498 ATGATGGTGGAGACCTCAACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCTGGTTTCCGGCATTCTTGACATCGCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGGCAGAGGAACATAGTCGGTGGCTTCTTGGTCTTCGGCCGTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTTCAATTTGACGGATTTCGGAGGAGTGGGTGATGGGGTTACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTTCCAAATTGGGGAAGAAAGGTGGGGCCCAGCTCAATGTTCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGTCACATGACTTTGTTTCTAGCTGAAGATGCTGTTGTGCTTGGCATTGATGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGTTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTCATAACAGGGCATAACGGTACCATAAATGGACAGGGACCAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGACTGCAAAAACATTACTATAAAAAATGTTACAATATTGGCTCCTGTATTTGAAGCTCCTAATACTGATGGCATAGATCCTGACTCTTGCGAGGATATGTTGATAGAAGACTGTTACATAAGTGTGGGAGATGATGCAATTGCGATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGCAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTCCGTTCTATGGTCAGTGCTGGTGTCTCAATAGGCAGTGAGATGTCTGGCGGGGTTTCCAACGTCACGGTGGAGAACCTTTTTGTATGGGATTCCCGGCGTGGTGTAAGGATTAAGACTGCAGCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGAAACCTAACGTTCGAGAATGTCCGTGTTGGAATTGTTATGAAGACAGATTACAACGAGCACCCTGATGATGGGTATGACCCTACGGCACTTCCAGAAATCAGAGACATAAGCTTCACCACTGTCCATGGCCATGGAGTTCGTGTGCCGGTGCGTATCCATGGTAGTGAAGCGATTCCGGTGAGAAATGTAACTTTTCGCGACATGTCAGTAGGGTTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCCTTTGTTGAAGGCCAAGTAATAGGGACCATCTTTCCTTCTCCATGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTGGTTAAGCATTCTGCATCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1479 0.4692 MMVETSTLGRFHHQRLDFKRWFPAFLTSHKTLFTVLWIAAFASVFLWQRNIVGGFLVFGRVPARPMPKLRPVAFNLTDFGGVGDGVTLNTEAFERAVSAISKLGKKGGAQLNVPSGRWLTAPFNLTSHMTLFLAEDAVVLGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGPAWWKKYRQKRLNHTRGPLVQIMWSSDIVISNITLRDSPFWTLHPYDCKNITIKNVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYARPSMNIMIRNLVVRSMVSAGVSIGSEMSGGVSNVTVENLFVWDSRRGVRIKTAAGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYDPTALPEIRDISFTTVHGHGVRVPVRIHGSEAIPVRNVTFRDMSVGLTYKKKHIFQCAFVEGQVIGTIFPSPCENLDRYNEQGQLVKHSASQNVTDIDYDF* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1498 492 Gene3D - 62 454 IPR012334 -
Lja4g1498 492 Pfam Glycosyl hydrolases family 28 169 451 IPR000743 GO:0004650|GO:0005975
Lja4g1498 492 PANTHER PECTIN LYASE-RELATED 22 490 - -
Lja4g1498 492 SUPERFAMILY Pectin lyase-like 65 465 IPR011050 -
Lja4g1498 492 SMART pbh1 394 416 IPR006626 -
Lja4g1498 492 SMART pbh1 303 325 IPR006626 -
Lja4g1498 492 SMART pbh1 241 268 IPR006626 -
Lja4g1498 492 SMART pbh1 331 352 IPR006626 -
Lja4g1498 492 SMART pbh1 421 442 IPR006626 -
Lja4g1498 492 SMART pbh1 360 381 IPR006626 -
Lja4g1498 492 SMART pbh1 269 290 IPR006626 -
Lja4g1498 492 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 22 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1498 Lja-Chr4 13861449 13866652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1498 10 491 Glycoside Hydrolase AT1G19170 75.758 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1498 - - gmx:100818529 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1498 4 13861449 13866652 Lja4g1498 4 13861449 13866652 ECH
Lja4g1498 4 13861449 13866652 Lja6g1983 6 47797122 47801594 PCT