Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1965 ATGGCTAATGACTATTTGACCCGTTCTCACTCTTTCAGAGAGAGGCTTGATGAAACCCTTGCTGGTCAAAAGAATGAAATTTTGACTCTTCTGTCAAGGATTGTAGCCAAGGGCAAGGGAATCCTGCAACAAAATCAGATCATTGCAGAGTTTGAAGAAATCCCTGAGGAGAGTAGGCAAAAACTCTTCAATGGGGCCTTTGGAGAAATTTTAAGATCTACCCAGGAAGCTATTGTGTTGCCACCATTTGTTGCTCTGGCGGTTCGTCCTAGGCCTGGTGTTTGGGAGTATCTGCGAGTGGATGTGTACTCCATTGTTGTTGATGAGCTGCGTCCTGCTGAGTATCTGAAGTTCAAGGAGGAACTTGTTGATGGAAGTTCTAATGGAAACTTTGTGCTTGAGTTGGACTTTGAACCATTCAATGCATCCTTCCCCCGACCAACTCTGAACAAGTCAATTGGGAATGGTGTTGAGTTCCTCAACCGCCACCTTTCTGCCAAGCTTTTCCATGGCAAAGAAAGTCTGCAGCCACTGCTGGAGTTCCTCAGGCTTCACAGCTATAATGGACAGACTATGATGTTGAATGACAGAGTTCAGAACTTGAATTCTCTGCAACATGTTTTGAGAAAAGCTGAAGAGTATCTGATATCAGTTGCTCCTGAAACACCCTACTCTGAATTTGAACATAAATTCCAGGAGATTGGTTTGGAGAGAGGATGGGGTGACACTGCTGAGCGTGTCCTCGAGATGATTCAGCTTCTGTTGGATCTTTTCGAGGCACCGGATCCTTTCACCCTCGAGAAATTCCTCGGAAGAATCCCTATGGTCTTCAATGTTGTTATCCTTTCTCCCCATGGATACTTTGCCCAAGATAATGTCTTAGGATACCCTGATACTGGAGGACAGGTTGTTTACATCTTGGATCAAGTTCGTGCCTTGGAGAATGAGATGCTAAGTCGCATCAAGAAACAAGGCTTGGATATCACCCCTCGTATTCTCATTCTCACCCGTCTTCTCCCAGATGCAGTGGGAACTACTTGTGGCCAACGTCTTGAGAAGGTGTACAACACTGAGCATTGCCACATTCTTCGAGTTCCCTTTAGAACCGAGAAGGGAATTGTTCGCAAATGGATCTCAAGATTCGAAGTCTGGCCCTACCTAGAGAGATACACTGAGGATGTTGCCACTGAACTTTCCAAGGAGTTGCAGGGCAAGCCAGATCTGATAGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTGGCACATAAATTAGGTGTAACTCAGTGTACTATTGCTCATGCACTTGAGAAGACAAAGTACCCTGAGTCTGACATCTACTGGAAAAAATTTGAAGAGAAATATCACTTCTCAGCCCAATTCACTGCTGATCTTTTTGCAATGAACCACACAGACTTCATTATCACCAGTACCTTCCAAGAGATTGCTGGAAGCAAGGACAAAGTTGGACAGTACGAGAGTCACACTGCCTTCACCCTCCCAGGACTTTACCGTGTGGTTCACGGTATCGATGTCTTTGATCCAAAGTTTAACATCGTCTCTCCTGGAGCTGATATGGACATTTACTTCCCATACACTGAAACTGAGCGTAGGCTGACACATTTCCATCCTGACATTGAAGAGCTTCTTTTCAGCTCTGTGGAGAATGAGGAACACATATGTGTACTGAAGGACCGCAACAAGCCAATCATCTTCACCATGGCAAGGTTGGACCGTGTGAAGAACATAACAGGACTAGTTGAATGGTACGGCAAGAATGCCCGCCTGAGGGAGCTGGTGAACCTTGTGGTTGTTGCTGGAGATAGGAGGAAGGAGTCCAAGGACTTGGAAGAGATAGCTGAGATGAAGAAGATGTACGGCCTCATCGAGACATACAAGCTGAATGGCCAATTCAGGTGGATTTCCTCACAGATGGACCGCATAAGGAACGGGGAGCTCTACCGTGTGATCTGTGACACCAAGGGTGCTTTTGTGCAGCCTGCAATCTATGAAGCTTTTGGTTTGACTGTTGTTGAGGCCATGACTTGCGGGTTGCCAACATTCGCCACCTGCAATGGTGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGTTACCACATTGACCCTTACCATGGTGATCGTGCTGCTGAGACTCTTGTTGAGTTCTTTGAGAAGAGCAAAGCAGACCCATCTTACTGGGACAAAATCTCCCAAGGAGGTCTCCAGCGTATTCATGAGAAGTACACATGGAAAATTTACTCTGATAGGCTTCTGACTCTCACTGGTGTCTATGGCTTCTGGAAGCATGTGACCAACCTTGATCGCCGTGAGAACAAGCGTTACCTTGAGATGTTCTATGCCCTCAAGTACAGCAAATTGGCTGAGTCAGTGCCCCTTGCTGTTGAAGAGTAA 2421 0.4601 MANDYLTRSHSFRERLDETLAGQKNEILTLLSRIVAKGKGILQQNQIIAEFEEIPEESRQKLFNGAFGEILRSTQEAIVLPPFVALAVRPRPGVWEYLRVDVYSIVVDELRPAEYLKFKEELVDGSSNGNFVLELDFEPFNASFPRPTLNKSIGNGVEFLNRHLSAKLFHGKESLQPLLEFLRLHSYNGQTMMLNDRVQNLNSLQHVLRKAEEYLISVAPETPYSEFEHKFQEIGLERGWGDTAERVLEMIQLLLDLFEAPDPFTLEKFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLSRIKKQGLDITPRILILTRLLPDAVGTTCGQRLEKVYNTEHCHILRVPFRTEKGIVRKWISRFEVWPYLERYTEDVATELSKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSAQFTADLFAMNHTDFIITSTFQEIAGSKDKVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYTETERRLTHFHPDIEELLFSSVENEEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVVVAGDRRKESKDLEEIAEMKKMYGLIETYKLNGQFRWISSQMDRIRNGELYRVICDTKGAFVQPAIYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGYHIDPYHGDRAAETLVEFFEKSKADPSYWDKISQGGLQRIHEKYTWKIYSDRLLTLTGVYGFWKHVTNLDRRENKRYLEMFYALKYSKLAESVPLAVEE* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1965 806 Pfam Glycosyl transferases group 1 564 736 IPR001296 GO:0016757
Lja6g1965 806 PANTHER - 1 805 IPR012820 GO:0005985|GO:0016157
Lja6g1965 806 Gene3D - 146 275 - -
Lja6g1965 806 TIGRFAM sucr_synth: sucrose synthase 25 802 IPR012820 GO:0005985|GO:0016157
Lja6g1965 806 Pfam Sucrose synthase 8 553 IPR000368 GO:0005985|GO:0016157
Lja6g1965 806 Gene3D Glycogen Phosphorylase B; 527 753 - -
Lja6g1965 806 Gene3D - 25 145 - -
Lja6g1965 806 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 295 763 - -
Lja6g1965 806 PANTHER SUCROSE SYNTHASE 1 805 - -
Lja6g1965 806 Gene3D Glycogen Phosphorylase B; 280 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1965 Lja-Chr6 47538812 47544130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1965 2 806 Glycosyltransferase AT3G43190 82.733 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1965 K00695 - gmx:100806761 1491.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1965 6 47538812 47544130 Lja6g1965 6 47538812 47544130 ECH
Lja4g1473 4 13558231 13563854 Lja6g1965 6 47538812 47544130 PCT