Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1473 ATGGCCAATGGTCTGACCCGAGTTCACAGCCTCCGGGAGAGGCTTGATGAGACCCTTGCTACCAACAGGAATGAAATTTTGGCCCTTCTGTCAAGGATTGAAGCCAAGGGCAAGGGGATCCTGCAACATCACCAGATCATTGCTGAGTTTGAGGAAATTCCTGAAGAGAACAGGCAGAAGCTAACTGATGGAGCTTTTGGAGAAGTTTTGAGATCCACACAGGAAGCCATAGTTTTACCACCATGGGTTGCTCTTGCTGTTCGTCCAAGGCCTGGTGTTTGGGAGTATCTGAGAGTGAATGTGCATGCTCTTGTTGTTGAAGAGCTGCAACCTGCTGAGTTTCTGCACTTCAAGGAGGAACTTGTTGATGGAAGTTCTAATGGCAACTTTGTGCTTGAGTTGGACTTTGAACCATTTAATGCATCGTTTCCTCGCCCAACTCTGAACAAGTCAATTGGGAATGGTGTGGAATTCCTCAATCGCCACCTTTCTGCTAAACTCTTCCATGACAAGGAGAGCTTGCATCCACTTCTGGAATTTCTCAGACTTCACAACTACAATGGAAAGACTTTGATGTTGAATGACAGGATTCAGACCCCAAATGCTCTCCAACATGTTCTGAGGAAAGCTGAAGAGTACCTAGGCACACTTCCTCTTGAGACACCTTACTCAGAATTTGAGCACAAGTTCCAGGAAATTGGTTTGGAGAGAGGGTGGGGTGACACTGCTGAGCGTGTCCTTGAGTCCATTCAACTCCTTTTGGATCTTCTTGAGGCACCTGACCCGTGCACCCTCGAAACTTTCCTAGGAAGAATCCCTATGGTCTTTAATGTGGTGATCCTTTCACCCCATGGTTACTTTGCTCAAGACAATGTCTTGGGTTACCCTGATACTGGTGGCCAGGTTGTTTACATCTTGGATCAAGTGCGTGCATTGGAGAGTGAGATGCTCCAACGCATTAAGCAACAAGGCTTGGATATTGTTCCTCGCATTCTCATTATCACTCGTCTTCTCCCTGACGCAGTGGGAACTACTTGTGGCCAACGTCTTGAGAAGGTGTATAACACCGAGCACTGCCACATTCTTCGAGTGCCCTTCAGAAATGAGAAGGGAATTGTCCGTAAATGGATCTCAAGATTCGAAGTCTGGCCCTACCTAGAAACTTATACTGAGGATGTTGCTCATGAGCTTGCCAAAGAGTTGCAAGGGAAGCCTGATCTGATCGTTGGAAACTACAGTGATGGAAACATCGTTGCCTCTTTGTTGGCACATAAATTGGGTGTCACTCAGTGTACCATTGCTCATGCACTTGAGAAGACCAAATACCCCGAATCCGACATCTACTGGAAGAAATTCGAAGAGAAGTATCACTTCTCATGCCAATTTACAGCTGATCTCTTTGCAATGAATCACACTGACTTCATCATCACCAGTACATTCCAAGAGATTGCTGGAAGCAAGGATACTGTAGGACAGTATGAGAGCCACACTGCCTTCACCCTTCCAGGACTCTACCGAGTCGTCCACGGTATCGATGTCTTCGATCCAAAGTTCAACATTGTCTCACCCGGAGCTGATCAGACCATTTACTTCCCGTACACTGAAACTAGCCGTAGGTTGACATCCTTCCACCCTGAAATTGAAGAGCTTCTATACAGCTCAGTCGAGAACGAAGAACACATATGTGTGTTGAAGGACCGAAGCAAGCCGATTATCTTCACCATGGCGAGGTTGGACCGTGTGAAGAACATTACAGGACTTGTTGAGTGGTATGGCAAGAATGCTAAGCTGAGGGAGCTGGTGAACCTTGTGGTTGTTGCTGGAGACAGGAGGAAGGAGTCAAAGGACTTGGAAGAGAAAGCTGAGATGAAGAAGATGTATAGCCTGATTGAGACCTACAAGCTAAATGGGCAATTCCGGTGGATTTCATCTCAGATGAACAGGGTCAGGAACGGAGAGCTGTACCGTGTCATTTGCGACACGAAGGGAGCGTTCGTGCAGCCTGCTGTGTATGAAGCTTTTGGTTTGACAGTGGTTGAGGCCATGACTTGTGGGTTGCCAACATTTGCTACCTGCAATGGTGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGTTTCCACATTGACCCTTACCATGGTGACCGTGCTGCCGATTTACTTGTTGAGTTCTTTGAGAAGGTTAAGGTTGATCCAACTCACTGGGACAATATCTCTCATGGTGGTCTTCAGCGTATTGAAGAAAAGTACACATGGCAGATTTACTCTCAGAGGCTTCTCACTCTCACTGGTGTCTATGGCTTCTGGAAGCATGTGTCTAACCTTGACCGCCTTGAGAGCCGCCGCTATCTTGAGATGTTCTATGCACTTAAGTACCGCAAATTGGCTGAGTCTGTGCCCCTTGCTGTTGAAGAGTGA 2418 0.4702 MANGLTRVHSLRERLDETLATNRNEILALLSRIEAKGKGILQHHQIIAEFEEIPEENRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVEELQPAEFLHFKEELVDGSSNGNFVLELDFEPFNASFPRPTLNKSIGNGVEFLNRHLSAKLFHDKESLHPLLEFLRLHNYNGKTLMLNDRIQTPNALQHVLRKAEEYLGTLPLETPYSEFEHKFQEIGLERGWGDTAERVLESIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALESEMLQRIKQQGLDIVPRILIITRLLPDAVGTTCGQRLEKVYNTEHCHILRVPFRNEKGIVRKWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPYTETSRRLTSFHPEIEELLYSSVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYSLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPTHWDNISHGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1473 805 Gene3D - 24 144 - -
Lja4g1473 805 Pfam Sucrose synthase 7 552 IPR000368 GO:0005985|GO:0016157
Lja4g1473 805 Gene3D Glycogen Phosphorylase B; 279 795 - -
Lja4g1473 805 PANTHER - 3 804 IPR012820 GO:0005985|GO:0016157
Lja4g1473 805 Pfam Glycosyl transferases group 1 563 726 IPR001296 GO:0016757
Lja4g1473 805 TIGRFAM sucr_synth: sucrose synthase 23 801 IPR012820 GO:0005985|GO:0016157
Lja4g1473 805 Gene3D - 145 274 - -
Lja4g1473 805 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 294 762 - -
Lja4g1473 805 PANTHER SUCROSE SYNTHASE 3 804 - -
Lja4g1473 805 Gene3D Glycogen Phosphorylase B; 526 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1473 Lja-Chr4 13558231 13563854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1473 1 805 Glycosyltransferase AT3G43190 85.396 0.0 1441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1473 K00695 - gmx:547508 1553.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1473 4 13558231 13563854 Lja4g1473 4 13558231 13563854 ECH
Lja4g1473 4 13558231 13563854 Lja6g1965 6 47538812 47544130 PCT