Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1963 ATGGCGTCGTCAGAGAATGAGGCTTCTTCTCCAGTTGCTTCTGTACCTGCCTGTATGAACAAGTTTAGGCTCTATGAGACTCTATCGAACTTTTACATGATAGGTAGGGACAAGAACAGGACATGTTGGAGAGTGCTAAAGATTGATCGGCAAGATCCAGCTGAACTAAATGTGTGTGAAGATTCCACCACATATACAGAAAATGAATGTTCTGACCTGTTGAGGCGTATCCATGAGGGGAACAAGTCCACAGGTGGACTGAAATTTGTTACAACTTGTTATGGAATTGTTGGGTTCGTAAAGTTTTTAGGGCCGTACTACATGCTGCTTATCACCAAAAGAAGGCAAATTGGTGCAATCTGTGGTCATGCAGTATATGCTGTCTCAAAGAGTGAGATGATTCCACTACGGAATTCTTCGGCTAATTCTAACATCACGGATGCTAAAAATGAAAACAGATACAAGAAGCTGCTATGCATGGTCGACCTTACAAAGGACTTCTTTTTCAGCTACTCTTACCATATTATGCGTAGTCTTCAAAGGAACTTGTGTGAGAATGAGACTGGCCATGTCCTTTATGAGACCATGTTTGTCTGGAATGAGTTTTTGACCCAAGGAATTAGGAATCACCTCCAGAATACTGTTTGGACAGTTGCACTAGTGTACGGCTTTTTTAAACAGGACACACTCACAATATCTGGGCGGGAGTTCATACTGACGCTCATTTCAAGACGATCACGCCATTATGCTGGCACTAGGTATTTGAGACGAGGTGTTAACGAGAAGGGCAGAGTAGCTAATGATGTTGAGACAGAACAAATTGTATTTGAGGATGTCCCTGAGGGTCTCCCGGTCCAAATAAGCTCTGTGGTCCAGAATCGGGGCTCAATCCCTCTTTTCTGGTCACAGGAAACTTCACGTCTAAATCTTAAACCAGATATCATATTGTCAAAGAAGGATCAGAATTATCAAGCTACCAGACTTCACTTTGAAAATCTTGTCAAAAGATATGGGAACCCCATAATAATTTTGAATTTGATAAAGACTCGTGAGAGGAAGCCTCGCGAGTCCATACTTCGTACAGAGTTTGGTAACGCTATTGATTTCATCAACAAAGATTTACCGGAGGAGAACAGGCTTAGGTTCCTTCATTGGGATCTGCACAAACATTTTCAGAGCAAATCCGCAAATGTTTTGCTACTTCTCGGCAAAGTGGCTGCGCATGCCTTGACACTAACAGGTTTTTTCTACTGCCAAGTGACACCAACTTTTAGACCAGAAGACTGTATAAAATGGCCATCTACTGATTTTGCATGCGGCAATGCTGATGAGGGAAGCTTTCAACCCACAAGACATGTGGGTGTTGACGAAGAGGATGCTAATAATATAGGGAGGAAACCTAGTGGAGAAAACAATGTTATTAATGGAAACCATTCTCTCAAGCAGCCTATGTTCCAGAGGGGGGTTCTCAGGACCAATTGCATAGACTGCATAGATCGGACAAATGTTGCACAATATGCATATGGGTTGGCTGCACTTGGTCACCAGCTTCATGCTCTGGGAATTATTGATCACCCAAAAATTGACCTTGATGATCCTCTCGGTGATGATTTGATGAGATTTTATGAACAGATGGGTGACATACTTGCACACCAGTATGGTGGTTCTGCTGCACACAACAAGATATTCTCTGAGAGGAGGGGACAATGGAGAGCTGCAACACAGTCTCAGGAATTTTTCAGGACTCTTCGACGCTATTACAGCAATGCATACATGGATGCTGAGAAACAAAATGCTATTAACGTATTCCTGGGGCATTTTCAGCCACAACAGGGTAAACCTGCTCCATGGGAGTTGGGTTCAGATCAACATTATGATGTAGAGAAGCACGGGGATGATGATGCGAGGTCCATTGTCAAAATTTGTTTCTCAGATGGAAGCATTCTTCACGACAGTTCTACAGCTTTGTCTGCCCAAAATCCCAAGCTGGAAAAATTCTCAAAGCTTGGATTGGTTGACCAATCTAAAGAAGGAAGTGAGGTTTTTTGTGAGTCATCGCCTGAAATATCAACTTCTGAGAGTGACATGTCATTTTCAAGGTCCACTCCCTCAGTGCCTCGGAGACATCTTTTTGGAGACATACAAAGAGAGCACTGCCTTGAAACTGATCATATTCTGTATTCTGGGCATAAGGGGTTATCCAGCTCCTCCAACTTTGTTGACTTAGACTGTCTATCTTTTTCAGGAAATTCATGTGAAGAAGAGCCATTTGAGAGGTCGTCGATTACAAACTCAACTGTTGCTGGGTTTTCTTCAGAAAATGTTGTTAATGGAGTTATTATTGGAGGAGATACAACTCCCTCCACTAGTGATTTGGACTCCAGCTCTAAGGGAAGCCATAGTGGACGGTCCAAAGTTCTAGAGGAATTTCCTGATACTTTTGTACACTGGGTGACTAATGGACAGACACTCCATTGA 2478 0.4274 MASSENEASSPVASVPACMNKFRLYETLSNFYMIGRDKNRTCWRVLKIDRQDPAELNVCEDSTTYTENECSDLLRRIHEGNKSTGGLKFVTTCYGIVGFVKFLGPYYMLLITKRRQIGAICGHAVYAVSKSEMIPLRNSSANSNITDAKNENRYKKLLCMVDLTKDFFFSYSYHIMRSLQRNLCENETGHVLYETMFVWNEFLTQGIRNHLQNTVWTVALVYGFFKQDTLTISGREFILTLISRRSRHYAGTRYLRRGVNEKGRVANDVETEQIVFEDVPEGLPVQISSVVQNRGSIPLFWSQETSRLNLKPDIILSKKDQNYQATRLHFENLVKRYGNPIIILNLIKTRERKPRESILRTEFGNAIDFINKDLPEENRLRFLHWDLHKHFQSKSANVLLLLGKVAAHALTLTGFFYCQVTPTFRPEDCIKWPSTDFACGNADEGSFQPTRHVGVDEEDANNIGRKPSGENNVINGNHSLKQPMFQRGVLRTNCIDCIDRTNVAQYAYGLAALGHQLHALGIIDHPKIDLDDPLGDDLMRFYEQMGDILAHQYGGSAAHNKIFSERRGQWRAATQSQEFFRTLRRYYSNAYMDAEKQNAINVFLGHFQPQQGKPAPWELGSDQHYDVEKHGDDDARSIVKICFSDGSILHDSSTALSAQNPKLEKFSKLGLVDQSKEGSEVFCESSPEISTSESDMSFSRSTPSVPRRHLFGDIQREHCLETDHILYSGHKGLSSSSNFVDLDCLSFSGNSCEEEPFERSSITNSTVAGFSSENVVNGVIIGGDTTPSTSDLDSSSKGSHSGRSKVLEEFPDTFVHWVTNGQTLH* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1963 825 ProSiteProfiles Sac phosphatase domain profile. 158 555 IPR002013 GO:0016791
Lja6g1963 825 MobiDBLite consensus disorder prediction 781 804 - -
Lja6g1963 825 PANTHER PHOSPHOINOSITIDE PHOSPHATASE SAC3-RELATED 3 824 - -
Lja6g1963 825 MobiDBLite consensus disorder prediction 781 801 - -
Lja6g1963 825 Pfam SacI homology domain 94 391 IPR002013 GO:0016791
Lja6g1963 825 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 3 824 IPR043573 GO:0043813|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1963 Lja-Chr6 47516307 47527397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1963 1 824 Acyl Lipid Metabolism Gene Families AT3G43220 61.520 0.0 992
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1963 K22913 - gmx:100786438 1343.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1963 6 47516307 47527397 Lja6g1963 6 47516307 47527397 ECH
Lja4g1468 4 13512929 13522970 Lja6g1963 6 47516307 47527397 PCT