Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1920 ATGGCTTCAACATCATCATCACTCTCATTTTCTTCCTCCATTCTTCCTTCACCCATTCCCCATGCCAAATCCAACCCAGTACCCCAAAATCCAATCTTTCGGGTTACCCGCTGCTCAGTTTCAGCTCAGGCGTCAAAAGCTGGTTCTTCTTCATCTTCTGTGTCCAAACACCGACGACAACGCAAAGAAACTGAGTTTCCTCAAGAATTGTTCTTTGAGAATATGTTGGAGAAACCCAAGAAGATGAAGAAGGAGAAGAAAAAGGTGAAGAAGCAGAGCAATCTTAAGGCCTGGGCTTACACTCTCACTGAAGCCTTATCCGATTGCATTCACCAGAACCAATGGCTTAAAGCCCTTGAGTTATTTGACATGGTTAGAGAGGAACCCTATTACCAGCCCAGAGAAGCAACTTACATGAAACTCATTGTGTTGCTTGGAAAATCAGGACAACCCCATCGTGCCCATCAGCTTTTTGACATTATAAAAGAAGATGGTTGTGAAAGTACCAAACTTTACACGGCCTTAATTGCAGCATATTGTCAGAACAACCTGGTTGATGGGGCACTTTTGATCCTTGATGAGATGAAGAACCTCCCTCAATGTCAGCCTGATGTTTTAACTTACAGTACTTTGATAAAAGCTCACCTGGATGCTCTGAAATTTGAACTGGTTGAGTTGCTGTTTGAAGAAATGGCTGAAAGATCTATCACACCAGACACTTCCACTCGGAACATTGTCCTCAGTGGTTATGGTAAGGCTGGGAGGTTTGATGAGATGGAGAAAATGCTGTCAAGTATGATGGAGAGCTCTACATGCAAGCCTGATGTTTGGACTATGAACACGGTCGTCAGTGTCTTTGGTAGTAAAGGTCTGATTGATATGATGGAGAAATGGTATGAAAAGTTATGTAATTTTGGGATACAGCCAGAAACACACGCTTTCAATATTTTGCTTGGAGCATATGGGAAGAAAAGATTGTATGGCAAAATGTCGTCTGTTATGCAGCATATGCGCAAGGTTCAATGTCGATGGACGACCTCAACTTATAACAATCTGATTGAGGCATTTGCAGACATTGGCGATGCTGAAAGCATGGAGCGCACCTTTGATCAAATGTGCTCTGAGGGTTTGAAACCAGATACGAAGACTTTCTGCTGCCTTATCAATGGTTATGGCAATGCTGGTATCTTCCATAAAGTAGTTAGCAGTTTTAATTTGGCTGGGAAGCATAAGATACGTGAGAATACTTCCTTTTACAATACAGTCATATCTGCATGTGCCAAGGAGGAGGCTTTGATGGAAATGGAGAGAGTTTTCGAGCGTATGAAAGAAAAACAATGCCAACCAGATGAAACAACATACTCCATCATGATTGAGGCTTACAGAAAAGAAGGTATGAATGACAAGGTATACTATTTGGAGCAGGAGAAGCAAATGATGATATCTGATGACAAAAGATCGAGTGAGCCAGAGGAGACGATCCATGGTTGA 1491 0.4219 MASTSSSLSFSSSILPSPIPHAKSNPVPQNPIFRVTRCSVSAQASKAGSSSSSVSKHRRQRKETEFPQELFFENMLEKPKKMKKEKKKVKKQSNLKAWAYTLTEALSDCIHQNQWLKALELFDMVREEPYYQPREATYMKLIVLLGKSGQPHRAHQLFDIIKEDGCESTKLYTALIAAYCQNNLVDGALLILDEMKNLPQCQPDVLTYSTLIKAHLDALKFELVELLFEEMAERSITPDTSTRNIVLSGYGKAGRFDEMEKMLSSMMESSTCKPDVWTMNTVVSVFGSKGLIDMMEKWYEKLCNFGIQPETHAFNILLGAYGKKRLYGKMSSVMQHMRKVQCRWTTSTYNNLIEAFADIGDAESMERTFDQMCSEGLKPDTKTFCCLINGYGNAGIFHKVVSSFNLAGKHKIRENTSFYNTVISACAKEEALMEMERVFERMKEKQCQPDETTYSIMIEAYRKEGMNDKVYYLEQEKQMMISDDKRSSEPEETIHG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1920 496 MobiDBLite consensus disorder prediction 1 30 - -
Lja6g1920 496 Gene3D Tetratricopeptide repeat domain 360 492 IPR011990 GO:0005515
Lja6g1920 496 PANTHER OS03G0309800 PROTEIN 5 484 - -
Lja6g1920 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Lja6g1920 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Lja6g1920 496 PANTHER ATPASE EXPRESSION PROTEIN 3 5 484 - -
Lja6g1920 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Lja6g1920 496 MobiDBLite consensus disorder prediction 1 19 - -
Lja6g1920 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Lja6g1920 496 MobiDBLite consensus disorder prediction 43 62 - -
Lja6g1920 496 Coils Coil 428 448 - -
Lja6g1920 496 Pfam PPR repeat 313 339 IPR002885 -
Lja6g1920 496 Pfam PPR repeat 278 307 IPR002885 -
Lja6g1920 496 Pfam PPR repeat 137 166 IPR002885 -
Lja6g1920 496 Pfam PPR repeat 242 269 IPR002885 -
Lja6g1920 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Lja6g1920 496 Pfam PPR repeat family 415 461 IPR002885 -
Lja6g1920 496 Pfam PPR repeat family 170 214 IPR002885 -
Lja6g1920 496 Pfam PPR repeat family 346 391 IPR002885 -
Lja6g1920 496 Gene3D Tetratricopeptide repeat domain 221 358 IPR011990 GO:0005515
Lja6g1920 496 Gene3D Tetratricopeptide repeat domain 70 220 IPR011990 GO:0005515
Lja6g1920 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 274 IPR002885 -
Lja6g1920 496 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Lja6g1920 496 TIGRFAM PPR: pentatricopeptide repeat domain 419 451 IPR002885 -
Lja6g1920 496 TIGRFAM PPR: pentatricopeptide repeat domain 348 381 IPR002885 -
Lja6g1920 496 TIGRFAM PPR: pentatricopeptide repeat domain 207 240 IPR002885 -
Lja6g1920 496 TIGRFAM PPR: pentatricopeptide repeat domain 244 276 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1920 Lja-Chr6 46910183 46912924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1920 132 476 Glycosyltransferase AT1G05670 22.832 7.81e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1920 - - gmx:100776657 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1417 4 12835109 12837725 Lja6g1920 6 46910183 46912924 PCT