Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1417 ATGGCTTCCATATCCCTTTCGTTCTCTTCTTCCATCGTCCCCTCTCCGATTTCCCACCACAAATGCAAGAAAACCCAACACCCCAGTTCCCAAAATCCAATCTTTCGTGTAACCCACTGCGCAATTTCATCTCCACCGTCCAAAACTGCACCTCCGGTTGTCAAAAAGAAACACTGGAAACGAGGTGAGTTTCCTGGTACTTCGGAACCTGGGAGTACGAGGAAGGGTGGTCCCATTAAGAATTTGAAGAAGAAGCTCGACAGAAAGAACAATGCTAAAGCTTGGGTCAACACTGTCACTGAAGACCTATCTGAACGCATTGAGAAGAAGCAATGGCTTCAAGCCCTTGAGGTATTTGACATGCTTAAAGAACATTCCTTTTATGAACCCAAAGAAGGGACTTACATGAAGCTCATTGTGTTGCTTGGAAAATCCGGTCAACCCCACCGTGCCCGGCAACTTTTTACTACAATGATTGAAGAAGGTTGTGACCCTTCTCCTGAAACGTACACGGCGTTACTTGCTGCATATTGCAGGAGCAACCTGCTTGATGAGGCATTTTCGATTTTGAATGAGATGAAGAACCATCCTCTGTGCCAGCCTGATGTTTTCACTTACAGTACCTTAATAAAGCCCTGTGTGGATGCTTTCAAATTTGACCTTGTTGAGTTGCTGTATGAAGATATGGCTGCGAGATCTATCATGCCTAACACGGTCACTCAGAACATTGTTTTGAGTGGTTATGGCAAGGCTGGGAAGTTTGATCAGATGGAGAAAGTGCTGTCGAGCATGCTTGAGAGCACTTCGTGCAAGCCTGATGTCTGGACAATGAACACAATCATCAGTGTCTTTGGTAACATGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAGTTCCGCAATTTCGGGATAGAGCCAGAAACTCGCACTTTTAATATCTTGATTGGTGCCTATGGGAAGAAAAGAATGTATGACAAAATGTCTACTGTTATGGAGTATATGCGGAAGTTGCAATTTCCATGGACCACCTCTACTTATAACAATGTGATTGAGGCATTTACAGATGTTGGTGATGCTAAAAACATGGAGTATACATTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATTCCAAGACTTTCTGCTGCCTTATCAATGGTTTTGCAAATGCAGGTCTCTTCCATAAAGTAATTAGCACTGTTCAGTTGGCTGAGAAGTTTGAGATAGCTGAGAACACCACATTTTACAACGCAGTATTATCTGCATGTACAAAGGCAGAGGACTTGATGGAAATGGAGAGAGTTTTCAAGCGAATGAAAGATAACCAATGTCCACCAGATGACACAACATACACGATCATGATCGAGGCATATAGAAAAGAGGGTATGAATGACAAGATATACTATTTAGAGCAGGAGAAGAAAACAATGATAACTGATGGTATAAAAGTGAGCCAGCCGGAGGATGAATTCTTCAGTTGA 1485 0.4276 MASISLSFSSSIVPSPISHHKCKKTQHPSSQNPIFRVTHCAISSPPSKTAPPVVKKKHWKRGEFPGTSEPGSTRKGGPIKNLKKKLDRKNNAKAWVNTVTEDLSERIEKKQWLQALEVFDMLKEHSFYEPKEGTYMKLIVLLGKSGQPHRARQLFTTMIEEGCDPSPETYTALLAAYCRSNLLDEAFSILNEMKNHPLCQPDVFTYSTLIKPCVDAFKFDLVELLYEDMAARSIMPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTSCKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSTVMEYMRKLQFPWTTSTYNNVIEAFTDVGDAKNMEYTFDQMRAEGMKADSKTFCCLINGFANAGLFHKVISTVQLAEKFEIAENTTFYNAVLSACTKAEDLMEMERVFKRMKDNQCPPDDTTYTIMIEAYRKEGMNDKIYYLEQEKKTMITDGIKVSQPEDEFFS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1417 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 272 IPR002885 -
Lja4g1417 494 TIGRFAM PPR: pentatricopeptide repeat domain 346 378 IPR002885 -
Lja4g1417 494 TIGRFAM PPR: pentatricopeptide repeat domain 276 307 IPR002885 -
Lja4g1417 494 TIGRFAM PPR: pentatricopeptide repeat domain 134 166 IPR002885 -
Lja4g1417 494 TIGRFAM PPR: pentatricopeptide repeat domain 169 196 IPR002885 -
Lja4g1417 494 TIGRFAM PPR: pentatricopeptide repeat domain 239 274 IPR002885 -
Lja4g1417 494 TIGRFAM PPR: pentatricopeptide repeat domain 417 448 IPR002885 -
Lja4g1417 494 TIGRFAM PPR: pentatricopeptide repeat domain 311 339 IPR002885 -
Lja4g1417 494 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g1417 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Lja4g1417 494 Pfam PPR repeat 242 267 IPR002885 -
Lja4g1417 494 Pfam PPR repeat 134 163 IPR002885 -
Lja4g1417 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Lja4g1417 494 Gene3D Tetratricopeptide repeat domain 96 265 IPR011990 GO:0005515
Lja4g1417 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Lja4g1417 494 MobiDBLite consensus disorder prediction 46 81 - -
Lja4g1417 494 Gene3D Tetratricopeptide repeat domain 266 336 IPR011990 GO:0005515
Lja4g1417 494 Gene3D Tetratricopeptide repeat domain 337 401 IPR011990 GO:0005515
Lja4g1417 494 Gene3D Tetratricopeptide repeat domain 402 478 IPR011990 GO:0005515
Lja4g1417 494 Pfam PPR repeat family 169 213 IPR002885 -
Lja4g1417 494 Pfam PPR repeat family 344 391 IPR002885 -
Lja4g1417 494 Pfam PPR repeat family 272 319 IPR002885 -
Lja4g1417 494 Pfam PPR repeat family 413 459 IPR002885 -
Lja4g1417 494 MobiDBLite consensus disorder prediction 1 31 - -
Lja4g1417 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Lja4g1417 494 PANTHER OS03G0309800 PROTEIN 1 481 - -
Lja4g1417 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Lja4g1417 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Lja4g1417 494 PANTHER ATPASE EXPRESSION PROTEIN 3 1 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1417 Lja-Chr4 12835109 12837725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1417 129 476 Glycosyltransferase AT1G05670 23.714 3.39e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1417 - - aip:107635404 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1417 4 12835109 12837725 Lja4g1417 4 12835109 12837725 ECH
Lja4g1417 4 12835109 12837725 Lja6g1920 6 46910183 46912924 PCT