Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1860 ATGGGTTCTCGGATTCAGCTTCTGGGTCTGTGTTTGTTGAGCTTCACTTTTCTTTTTGTGAACACACTGAGTGAAAAAGGGACTGTCACCATTGATGGGAAATCTGCAATCGGAAACATTGATGATGATTTTGTCTGTGCAACTCTGGATTGGTGGCCTCCTGAGAAATGTGACTATGGGAGATGCAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGACCTGAACAACAAGATTTTTCTAAATGCAGTGAAAGCGTTTTCACCGTTGAAACTAAGATTAGGTGGCAGTTTGCAAGATAAGGTAAATTATGGAACTGAAGATTACCACCGACCATGTACTCCTTTTGTTAGGAAACAATCTGAAATGTTTGGCTTCACGGAAGGGTGCCTCCCAATGAATAGATGGGATGAACTAAACAAATTTTTTGCAAAATCAGGGGCTAAGATTATCTTTGGTTTAAACGCTCTTGCTGGAAAATCAATACAATCTGGTTCTGCCATAGGACCTTGGAACTACACTAATGCCGAATCCTTTATTCGATACACTGTTGGAAAGAACTACGCCATTCATGGATGGGAACTTGGCAATGAGTTGAGTGGTAATGGAGTGGGAACAAAAGTTTCTGCAGACCAATATGCTTCTGATTTTGCTGCTTTACGAGCAATAGTTGACAATGCATATCGAGAGATTCAGCCAAAGCCACTAGTCCTTGCTCCTGGAGGTTTCTTTGATGCAGCTTGGTTCAAGGAATTCATAAGCAAATCGGGTAAATCTATAGATGTCGTCACCCACCACATTTATAACCTTGGAGCAGGAGTTGATGAGCACCTTGAGGAAAGAATTCTTAATCCTGCCTCTCTTGATGGTATTGCAAGCACATTCAAAGATCTCAAAAGTGTACTCCAAAGTACAGCAACCTCAGCAACAGCGTGGGTTGGCGAGTCAGGAGGGGCTTACAACAGTGGCCGGCATCTTGTATCCGATACATTCTTGTACAGTTTCTGGTATTTGGATCAGCTTGGCATGTCGGCTTCTTACGACACCAAAACATATTGCAGACAGACTTTGATTGGAGGAAACTATGGTTTACTAAATACTACTACTTTCCTACCGAACCCGGACTACTATAGTGCTCTTCTATGGCACCGACTCATGGGAAGGAGTGTGCTATCAACTACCTTCTCTGGGACAAAAAAGATACGAGCTTATGCTCACTGTGCAAAGCAATCTAAAGGAATCATAATATTATTGATCAACCTGGACAGCAGCACAGCAATTGAAGCAGAAGTGACCTTAAGCGACAATAAATTTCTGCGGCACAGAAAGATGGCTGATAATTCAAAATTGACGGAACTTCCTCTCCGTGGTGCAAGCGGAACAGCTAGAGAAGAGTACCATCTAACACCAGGGGGTGGGGATATACATAGCCAAATCATGGTGCTAAATGGAAACGCTCTAACTGTGAATTCAGCTGGCGATATTCCTGCTTTGGAGCCTTTGTTTGTGAACTCATCAATGCCAATAACGGTTGCTCCTTTCTCTATTGTATTTGCTCATATACCTGATGCTGTTGTTGCAGCATGCAACTAG 1590 0.4283 MGSRIQLLGLCLLSFTFLFVNTLSEKGTVTIDGKSAIGNIDDDFVCATLDWWPPEKCDYGRCSWGLASLLNLDLNNKIFLNAVKAFSPLKLRLGGSLQDKVNYGTEDYHRPCTPFVRKQSEMFGFTEGCLPMNRWDELNKFFAKSGAKIIFGLNALAGKSIQSGSAIGPWNYTNAESFIRYTVGKNYAIHGWELGNELSGNGVGTKVSADQYASDFAALRAIVDNAYREIQPKPLVLAPGGFFDAAWFKEFISKSGKSIDVVTHHIYNLGAGVDEHLEERILNPASLDGIASTFKDLKSVLQSTATSATAWVGESGGAYNSGRHLVSDTFLYSFWYLDQLGMSASYDTKTYCRQTLIGGNYGLLNTTTFLPNPDYYSALLWHRLMGRSVLSTTFSGTKKIRAYAHCAKQSKGIIILLINLDSSTAIEAEVTLSDNKFLRHRKMADNSKLTELPLRGASGTAREEYHLTPGGGDIHSQIMVLNGNALTVNSAGDIPALEPLFVNSSMPITVAPFSIVFAHIPDAVVAACN* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1860 529 SUPERFAMILY (Trans)glycosidases 40 385 IPR017853 -
Lja6g1860 529 Gene3D Glycosidases 63 383 - -
Lja6g1860 529 PANTHER HEPARANASE-RELATED 23 528 - -
Lja6g1860 529 PANTHER HEPARANASE-LIKE PROTEIN 3 23 528 - -
Lja6g1860 529 Pfam Glycosyl hydrolase family 79, N-terminal domain 27 341 IPR005199 GO:0016020|GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1860 Lja-Chr6 45935214 45938888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1860 1 529 Glycoside Hydrolase AT5G61250 46.753 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1860 K07964 - gmx:100802477 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1860 6 45935214 45938888 Lja6g1860 6 45935214 45938888 ECH
Lja4g1859 4 18226459 18230489 Lja6g1860 6 45935214 45938888 PCT