Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1833 ATGGAGGCGTTAAGTGGCGGAGCAGGTGGTGGCGGAGGCGGAGGAGGATCGGAAGAGAAAGGGATATTTGAATACTTCGGTTGGGTTTATCACCTTGGCGTGAATTCCATCGGCCACCAGTATTGCCACCTTCGTTTCCTTTTCATCAGGGGCAAGTGCGTCGCAATGTACAAGCGTGACCCTCACCAGAACCCTGACATTAAACCCATTAGGCAGGGAGTTGTAGGGCCTACACTGATGGTGGAGGATCTCGGGCGTCGAAAGGTCAACGACGGGGATTTCTATGTGATACGCTTTTACAATCGATTAGATGAGGACAGAAAGGGAGAAATTGCTTGTGCTACAGCTGGGGAAGCCCAAGGATGGATGGAAGCATTTGATCATGCCAAGCAACAGGGTCAGTATGAGCTGACAAGAAGAGGCAGTGCCAGAGACAAACTAAACAAGGAAATGGAGATCAATCTGGTAGGACATCGACCTAGAGTGAAGCGGTATACCTCTGGGTTGCGGAAGCTTATAAGAATTGGTCAAGGTCCAGAGACACTCTTACGGCTATCATCAAAGTTTTTTGGTAGTCCCGACGGATTTGAAGGGGACGGTGGAGATGCATTTGATGCACATCAGTGGAAATGTGTTCGTACCATGGCTGGTATTAGAATTTTTGAGGATGTTTCTAGCCACAAGACTGGTAAGGGTATCCTCGCTAAGTCGGTTGGTGTTATTGATGCAACTGCAGATAGTGTTTTTGAAGTGTTTTTAAACACTGAGCGACAGCAAAGATATGAGTGGGATATGTTGATGGGTGACTTGGAGCTGATAGAGTCATATGATGGACATTACGATGTTGTGTATGGGACATACGATCCTAAGTATCTAACCCGGTGGCATTCAAAGCGAGATTTTGTCTTCTCTAGGCAATGGTTTCGAGCACAAGATGGAACATACACTATCTTGCTATTTCCAGCTATCCATAAGAAAAAGCCTCCCAGATCAGGCTTTCGACGTACAAAAATCAATCCGTCTACATGGGAGATTAGACATTTGAACACACCTATGGGATCCAATGGACCAAGATGTTTAGTGACCCACACTTTAGAGATACACTCCCAATCCTGGCATCGATGGAAGAATAGCCAGTGCACAAAATTTGAGAAGAGCATCCCGTATGCATTGCTGAGCCAAGTGGCAGGCCTAAGAGAATATATTGGAGCCAATCCGACACTCCACCAACAAGATGCCACTACTGTTGTTCATTCCAAAATCTCCAGCTTTTCTATGTCCAGTGCTGAATATGAAGAAGATACAGAAGTCCAGGATGAGTTTTATGATGCAATTGCTGCTGAGTCATTTTCATCAGATGAAGAAAGTGATGAGGAGGATGAGAAACTTGATAAGAAGGATCAGAGAGTAAAACTAAAGAATGTTTCATGGGCCATGACAACCTTAGCTTTGAAGCAAACAGCAGCTCCAGATGTAAGAGAAGAATTAGATCCTCATACAAGTCCTGTCACAATTGATTCAAGTGACTTCAATGGTTCTTTACGACAAGGAAAGGATGATAACGACACAAATTGTTGGACTTCCCCTAGTGGTGAAAGATTTATGATTAGAGGAAAGAACTATCTGAAAGATAACTCTAAGGTAGTTGGAGGAGAACCTCTTCTCAAGCTCATAGCCGTTGATTGGTTGAAAGTTGATAAATCTGTAGATAGAATTGCATTGCACAGTAGAAGTCTGGTTCAGTCTGAAGCTGGGAAGAAGCTTCCATTTATCCTTGTATTCAATCTCCAGGTTCCAGCTAAACCAAACTACAGTTTGGTTCTACATTACGCATCTTACAGACCGATACATAAAGATTCCCTATTGGCTAAGTTTTTGGATGGAGATGACATGTTCCGAGACTCAAGATTCAAACTAATTCCAAGTATAGTTGAGGGATATTGGATGGTCAAGCGAGCTGTTGGAACAAAAGCTTGCCTAATGGGGAAAGCTTTGACTTGTAAATACTTTAGACAAGACAATTTTTTGGAGATAGATGTGGATATTGGATCATCCTCTGTAGCTAGGAGTGTCGTTGGCCTTGTTCTCGGATATGTCACAAGCCTAGTTGTTGACCTTGCAATTTTGATAGAGGCAAAAGAAGAGGCTGAACTGCCAGAATACATTCTTGGAACTGTACGATTAAACCGCATAAGACTTGAATCAGCTGTACAGCTAGAGGTTTGA 2226 0.4344 MEALSGGAGGGGGGGGSEEKGIFEYFGWVYHLGVNSIGHQYCHLRFLFIRGKCVAMYKRDPHQNPDIKPIRQGVVGPTLMVEDLGRRKVNDGDFYVIRFYNRLDEDRKGEIACATAGEAQGWMEAFDHAKQQGQYELTRRGSARDKLNKEMEINLVGHRPRVKRYTSGLRKLIRIGQGPETLLRLSSKFFGSPDGFEGDGGDAFDAHQWKCVRTMAGIRIFEDVSSHKTGKGILAKSVGVIDATADSVFEVFLNTERQQRYEWDMLMGDLELIESYDGHYDVVYGTYDPKYLTRWHSKRDFVFSRQWFRAQDGTYTILLFPAIHKKKPPRSGFRRTKINPSTWEIRHLNTPMGSNGPRCLVTHTLEIHSQSWHRWKNSQCTKFEKSIPYALLSQVAGLREYIGANPTLHQQDATTVVHSKISSFSMSSAEYEEDTEVQDEFYDAIAAESFSSDEESDEEDEKLDKKDQRVKLKNVSWAMTTLALKQTAAPDVREELDPHTSPVTIDSSDFNGSLRQGKDDNDTNCWTSPSGERFMIRGKNYLKDNSKVVGGEPLLKLIAVDWLKVDKSVDRIALHSRSLVQSEAGKKLPFILVFNLQVPAKPNYSLVLHYASYRPIHKDSLLAKFLDGDDMFRDSRFKLIPSIVEGYWMVKRAVGTKACLMGKALTCKYFRQDNFLEIDVDIGSSSVARSVVGLVLGYVTSLVVDLAILIEAKEEAELPEYILGTVRLNRIRLESAVQLEV* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1833 741 Pfam START domain 227 373 IPR002913 GO:0008289
Lja6g1833 741 SUPERFAMILY Bet v1-like 203 367 - -
Lja6g1833 741 PANTHER PLECKSTRIN-LIKE (PH) AND LIPID-BINDING START DOMAIN PROTEIN 11 741 - -
Lja6g1833 741 MobiDBLite consensus disorder prediction 501 526 - -
Lja6g1833 741 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 526 731 IPR009769 -
Lja6g1833 741 Gene3D - 203 406 IPR023393 -
Lja6g1833 741 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 11 741 IPR045096 -
Lja6g1833 741 ProSiteProfiles START domain profile. 209 362 IPR002913 GO:0008289
Lja6g1833 741 CDD START 208 392 - -
Lja6g1833 741 MobiDBLite consensus disorder prediction 448 467 - -
Lja6g1833 741 MobiDBLite consensus disorder prediction 489 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1833 Lja-Chr6 45665837 45678463 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1833 - - gmx:100801191 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1833 6 45665837 45678463 Lja6g1833 6 45665837 45678463 ECH
Lja4g1826 4 17749598 17768344 Lja6g1833 6 45665837 45678463 PCT