Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1097 ATGGCCGCAAACGCCCCCATTTCCATGAAAGAAGTCTTAACGCTGGGTAGCGTGGGAATCAACCCGCAATTCATCACGTTCACTCACGTGACGATGGAATCGGAGCAGTACATTTGCGTCAGGGAAACCGCTCCTCAGAACAGTGTTGTCATGATTGATATGAACATGCCCATGCAGCCTTTGAGACGCCCCATCACTGCTGATTCCGCTCTCATGAACCCTAACACCAGAATTCTCGCTCTCAAAGCTCAAGTTCCGGGCACTACTCAGGATCATTTGCAAGTGTTCAACATTGAAACGAAAACAAAGATGAAATCATATCAAATGACCCAACAGGTTGTTTTTTGGAAGTGGATAACCCCAAAGATGCTAGGTGTAGTCACTCAATCGTCTGTGTATCATTGGTCAATCGAAGGTGATGGTGAGCCTGTCAAGGTGTTTGACCGAACAGCTAATATGGCAAATAACCAGATTATCAATTATCGTTGTGATCCTAGTGAAAAGTGGCTGGTTTTGATTGGAATTGCTCCCGGTTCTCCTGAGAGGCCGCAACTAGTAAAAGGAAACATGCAACTCTTCTCTGTGGATCAACAACGGAGTCAGGTTCTTGAAGCGCATGCAGCCTCATTTGCCTCATTTAGAGTTACTGGCAATGATAAGGACTCGATTCTTATTTGTTTTGCATCAAAGAGCTTCAATGCTGGACAGGTTACATCGAAGATGCATGTCATTGAACTTGGTGCCCAGCCAGGCAAGCCAACATTTACCAAAAAACAAGCAGATCTGTTCTTTCCTCCAGACTTTGCTGATGATTTTCCTGTGTCAATGCAGATTTCGAATAAATATGGCTTGATATATGTTATCACGAAACTTGGGCTTTTATTTGTCTATGATCTAGAGTCTGCCACTGCAGTTTACAGAAATCGAATCAGTCCGGATCCTATATTTTTGACCGCTGAAGCATCAACTGCAGGAGGCTTTTATGCCATAAATAGACGTGGTCAGGTGTTGCTTGCTACTGTGAATGAGGCCACCATTGTGCCTTTTGTTAGCGGTCAGTTAAATAATTTGGAACTTGCTGTTAATCTTGCTAAAAGAGGAAACCTCCCTGGTGCAGAGGAATTGGTTGTTCAACGTTTTCAAGAGTTGTTTGCTCAGACCAAGTATAAGGAAGCTGCAGAGCTTGCTGCAGAATCACCACGGGGAATACTTCGTACTCCTGACACTGTTGCTAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACGCCACCACTGTTGCAATACTTTGGAACTCTGTTAACCAGGGGAAAACTCAATGCTTTTGAATCGTTGGAACTGTCACGACTTGTCGTAAATCAGAACAAAAAGAATCTTTTGGAAAATTGGCTAGCAGAGGATAAGCTAGAATGCTGCGAGGAGCTTGGTGACCTTGTGAAGACGGTGGATAATGACCTTGCATTGAAAATCTACATCAAAGCTAGAGCCACACCAAAAGTTGTTGCAGCTTTTGCGGAGAGGAGGGAATTTGACAAGATCCTGATATATTCTAAGCAGGTTGGATACACACCTGATTACATGTTTCTTCTGCAAACAATTTTACGGACAGACCCACAGGGTGCTGTAAATTTTGCTCTGATGATGTCTCAAATGGAGGGAGGTTGCCCCGTTGACTACAACACAATAACTGATCTCTTTCTTCAGAGAAATTTGATCCGTGAGGCAACAGCTTTTTTGTTGGATGTGCTGAAGCCAAATCTGCCTGAACATGGATATCTTCAAACAAAGGTTCTGGAAATTAATCTTGTGACGTTTCCAAATGTTGCTGATGCCATATTGGCCAATGGCATGTTTAGTCATTATGATCGCCCACGCATTGGACAACTCTGTGAAAAGGCGGGGCTGTTCATACGGGCTCTTCAGCATTATTCTGAGTTGCCTGATATCAAACGTGTTATTGTGAATACACATGCCATTGAGCCACAGGCTTTAGTTGAGTTCTTTGGAACCCTTTCCCGAGAATGGGCACTTGAATGTATGAAAGATCTTTTATTGGTCAATCTTAGGGGCAATCTTCAAATAATTGTGCAGACTGCTAAGGAATATTCTGAGCAGCTGGGAGTTGATGCATGTATTAAACTCTTTGAGAATTTCAAATCCTATGAAGGACTGTACTTTTTCTTGGGTGCATACTTGAGCTCCAGTGAGGATCCTGATATTCACTTCAAGTACATTGAAGCTGCTGCTAAAACTGGACAACTGAAGGAGGTAGAGCGTGTGACTCGGGAATCGAATTTTTATGATGCTGAGAAGACAAAGAATTTTCTAATGGAAGCCAAGCTTCCAGATGCACGTCCACTAATTAATGTGTGCGATCGTTTTGGTTTTGTTCCGGATCTTACCCATTATCTTTATACTAACAACATGCTTCGCTATATTGAAGGTTATGTTCAAAAGGTCAATCCTGGAAATGCTCCTCTAGTTGTAGGACAGTTGTTAGATGATGAATGCCCTGAAGATTTCATTAAAGGTCTCATACTTTCAGTTCGTTCTCTTCTGCCAGTTGAGCCTTTAGTTGAAGAATGTGAGAAGAGGAATCGTCTCCGCTTACTGACTCAGTTCCTGGAGCATCTTGTAAGTGAAGGAAGTCAGGATGTACATGTACATAATGCGCTGGGTAAAATCATCATTGACAGCAACAACAATCCTGAGCATTTTCTCACAACCAACCCATATTATGACTCTCGAGTTGTTGGTAAATATTGCGAGAAGCGGGATCCTACCCTTGCTGTTGTTGCTTATCGAAGAGGGCAATGTGATGATGAGCTAGTTAATGTAACTAATAAAAATTCCTTGTTCAAACTCCAAGCAAGATATGTTGTGGAAAGGATGGACTCTGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTCAGAAGGTTGTTGATTGATCAAGTGGTGTCTACTGCTTTGCCTGAAAGCAAGAGTCCTGAACAAGTTTCAGCTGCAGTGAAAGCTTTTATGACTGCCGACCTCCCACATGAGTTAATTGAGCTTCTTGAAAAGATTGTGCTACAAAATTCTGCTTTTAGTGGAAACTTTAATTTGCAAAATTTGCTGATCCTTACTGCAATCAAGGCAGATCCTTCTAGAGTTATGGATTACATAAACAGGTTGGACAACTTTGATGGGCCTGCAGTAGGGGAGGTGGCAGTGGAAGCACAGCTATATGAAGAAGCATTTGCTATTTTCAAGAAATTCAATTTGAATGTTCAGGCTGTTAATGTCCTGCTGGATAACCTTCAAACTATTGATCGTGCTGTGGAATTTGCTTTCCGGGTTGAAGAGGATGCTGTTTGGACCCAGGTGGCCAAGGCGCAATTAAGAGAAGGATTGGTGAGTGATGCTATTGAGTCCTTCATTCGTGCAGATGATGCAACTCATTTCTTAGAAGTTATAAAGGCTGCTGAAGATGCAGATGTATACCATGACCTGGTAAAGTACCTTCTCATGGTTAGACAGAAGACCAAAGAGCCCAAGGTGGACAGTGAGCTCATTTATGCTTATGCTAAGATTGATCGGCTTGGAGAAATTGAAGAGTTCATACTTATGCCAAATGTTGCCAATTTGCCGAATGTTGGAGACCGCTTGTATGATGAGGCTCTTTATGAGGCTGCAAAAATTATATTTGCTTTTATATCTAACTGGGCTAAGTTAGCAGTAACATTAGTAAAGCTTAAACAGTTCCAGGGCGCTGTTGATGCTGCCCGGAAGGCAAACAGCGCAAAAACTTGGAAGGAAGTTTGTTTTGCTTGTGTTGATAATGAGGAGTTCCGCTTAGCTCAGATTTGTGGTCTCAATGTCATCATTCAGGTGGATGATTTGGAGGAGGTTAGTGAGTATTATCAGAACAGAGGATGCTTCAATGAGCTCATATCTCTAATGGAGAGTGGGCTAGGATTGGAACGTGCTCATATGGGTATCTTTACTGAATTGGGAGTTCTTTATGCAAGATATCGTGAAGAGAAGCTAATGGAACACATTAAGTTGTTCTCAACTAGGCTTAACATTCCAAAGCTTATTCGGGCATGTGATGAACAACAACACTGGAAAGAACTTACATACTTATACATCCAATATGATGAGTTTGATAATGCTGCTACCACTGTCATGAATCACTCTCCAGAATCTTGGGACCATATGCAATTCAAAGATATCATAGTTAAAATTGCCAGTGTGGAACTCTACTATAAGGCTGTTCACTTCTACTTGCAAGAACATCCTGATGTAATAAATGATCTTCTAAATGTGATTGCTCTTCGTGTGGACCATACCCGTGTAGTAGATATAATGAGGAAGGCTGGCCACCTCAAATTAGTCAAGCCGTACATGGTTGCAGTCCAAAGCAATAATGTGTTTGCTGTGAATGAAGCTCTGAATGAAATATATGTTGAGGAAGAGGACTATGATAGACTTCGAGAATCAACAGATCTGCATGACAATTTCGATCAGATAGGTCTTGCACAGAAGATTGAGAAGCATGAACTTCTTGAGATGAGGCGTGTTGCTGCATACATTTATAAGAAAGCAGGAAGATGGAAGCAATCCATTGCTTTGTCAAAGAAAGACAATCTTTACAAGGACTGTATGGAGACTTGCTCTCAATCTGGGGATCGTGAACTCTCCGAAGATTTGCTTGTCTACTTTATTGAGAAGGGGAAGAAAGAGTGTTTTGCATCATGCCTCTTTGTCTGTTATGATATCATACGGCCAGATGTTGCTCTTGAGTTAGCTTGGATGAACAACATACTTGATTTCGCTTTCCCGTATCTTCTACAGTTTATTCGAGAGTATACAAGCAAGGTAGATGAGCTTATCAAGGACAAAATTGAGGCACAAAATGAGGAGAAAGCAAAGGAGAAGGAGGAAAAGGACGTAATTGCTCAACAGAATATGTATTCCCAGTTGTTACCACTTGCTTTGCCAGCACCACCGATGCCAGGGATGCCAGGAATGGGGGGAGGATACGGCCCTCCACCACCTCCGCCAATGGGCGGAATGGGTGGAATGGGGATGCCGCCAATGCCTCCTTTTGGCATGCCCCCAAGCTACTGA 5118 0.424 MAANAPISMKEVLTLGSVGINPQFITFTHVTMESEQYICVRETAPQNSVVMIDMNMPMQPLRRPITADSALMNPNTRILALKAQVPGTTQDHLQVFNIETKTKMKSYQMTQQVVFWKWITPKMLGVVTQSSVYHWSIEGDGEPVKVFDRTANMANNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQVLEAHAASFASFRVTGNDKDSILICFASKSFNAGQVTSKMHVIELGAQPGKPTFTKKQADLFFPPDFADDFPVSMQISNKYGLIYVITKLGLLFVYDLESATAVYRNRISPDPIFLTAEASTAGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAEELVVQRFQELFAQTKYKEAAELAAESPRGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECCEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYMFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIGQLCEKAGLFIRALQHYSELPDIKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYSEQLGVDACIKLFENFKSYEGLYFFLGAYLSSSEDPDIHFKYIEAAAKTGQLKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELVNVTNKNSLFKLQARYVVERMDSDLWEKVLNPENEFRRLLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNLQTIDRAVEFAFRVEEDAVWTQVAKAQLREGLVSDAIESFIRADDATHFLEVIKAAEDADVYHDLVKYLLMVRQKTKEPKVDSELIYAYAKIDRLGEIEEFILMPNVANLPNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDNEEFRLAQICGLNVIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYREEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTVMNHSPESWDHMQFKDIIVKIASVELYYKAVHFYLQEHPDVINDLLNVIALRVDHTRVVDIMRKAGHLKLVKPYMVAVQSNNVFAVNEALNEIYVEEEDYDRLRESTDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDCMETCSQSGDRELSEDLLVYFIEKGKKECFASCLFVCYDIIRPDVALELAWMNNILDFAFPYLLQFIREYTSKVDELIKDKIEAQNEEKAKEKEEKDVIAQQNMYSQLLPLALPAPPMPGMPGMGGGYGPPPPPPMGGMGGMGMPPMPPFGMPPSY* 1706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1097 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1436 1579 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Pfam Clathrin-H-link 368 433 - -
Lja6g1097 1705 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1698 - -
Lja6g1097 1705 SUPERFAMILY ARM repeat 900 1065 IPR016024 -
Lja6g1097 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 992 1137 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Gene3D - 1 376 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lja6g1097 1705 SMART CLH_2 846 985 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 SMART CLH_2 1141 1282 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 SMART CLH_2 992 1137 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 SMART CLH_2 1287 1433 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 SMART CLH_2 699 841 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 SMART CLH_2 1436 1595 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 SMART CLH_2 550 692 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 SUPERFAMILY ARM repeat 1195 1530 IPR016024 -
Lja6g1097 1705 SUPERFAMILY ARM repeat 344 499 IPR016024 -
Lja6g1097 1705 SUPERFAMILY ARM repeat 456 792 IPR016024 -
Lja6g1097 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 550 696 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Pfam Region in Clathrin and VPS 1144 1280 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Pfam Region in Clathrin and VPS 992 1130 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Pfam Region in Clathrin and VPS 700 839 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Pfam Region in Clathrin and VPS 1439 1578 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Pfam Region in Clathrin and VPS 1289 1430 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Pfam Region in Clathrin and VPS 556 689 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Pfam Region in Clathrin and VPS 849 974 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Coils Coil 1616 1653 - -
Lja6g1097 1705 PANTHER CLATHRIN HEAVY CHAIN 1 1698 - -
Lja6g1097 1705 Pfam Clathrin, heavy-chain linker 343 366 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lja6g1097 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 699 841 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 SUPERFAMILY Clathrin heavy-chain terminal domain 4 342 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lja6g1097 1705 Gene3D - 1541 1637 - -
Lja6g1097 1705 Coils Coil 1476 1496 - -
Lja6g1097 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1141 1282 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 846 985 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1287 1433 IPR000547 GO:0006886|GO:0016192
Lja6g1097 1705 Pfam Clathrin propeller repeat 19 55 IPR022365 -
Lja6g1097 1705 Pfam Clathrin propeller repeat 154 196 IPR022365 -
Lja6g1097 1705 Gene3D Tetratricopeptide repeat domain 1196 1535 IPR011990 GO:0005515
Lja6g1097 1705 Gene3D Tetratricopeptide repeat domain 1056 1195 IPR011990 GO:0005515
Lja6g1097 1705 Gene3D Tetratricopeptide repeat domain 901 1055 IPR011990 GO:0005515
Lja6g1097 1705 SUPERFAMILY ARM repeat 1052 1194 IPR016024 -
Lja6g1097 1705 PIRSF CHC 2 1685 IPR016341 GO:0016192|GO:0032051|GO:0071439
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1097 Lja-Chr6 27778105 27789908 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1097 K04646 - gmx:100784651 3154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1097 6 27778105 27789908 Lja6g1097 6 27778105 27789908 ECH
Lja6g1097 6 27778105 27789908 Lja6g0385 6 9685469 9697511 ECH