Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0385 ATGGCGGCCGCCGCCAACGCTCCGATCACCATGCGTGAAGCCCTCACCTTGCCGAGCATTGGTATAAATCCGCAGTTCATCACGTTCACTCACGTGACGATGGAGTCTGATAAGTACATATGCGTTCGAGAAACTTCTCCGCAGAATAGCGTGGTGATCGTTGATATGAGCATGCCGATGCAACCTTTGAGGAGGCCTATTACTGCTGATTCTGCTCTTATGAATCCGAATTCGAGAATCCTTGCTCTGAAAGCCCAACTCCAAGGAACAACTCAAGATCACCTACAAATATTTAATATTGAAATGAAGGCAAAGATGAAATCTTACCAGATGCCTGAGCAGGTAGTCTTTTGGAAGTGGATTACTCCCAAGTTGTTGGGTCTTGTGACACAGACATCTGTATACCATTGGTCAATTGAGGGTGACTCTGAACCTGTAAAGATGTTCGAGAGAACAGCGAATTTGGCAAACAATCAAATAATTAATTATCGATGTGATCCTACAGAAAAGTGGTTGGTCTTGATTGGTATTGCTCCTGGTTCCCCTGAGAGGCCACAGTTGGTTAAAGGAAACATGCAACTCTTCTCCGTGGATCAACAGCGCAGCCAAGCTCTTGAAGCACACGCTGCATCATTTGCTCAGTTAAAAGTTCCTGGGAATGAAAATCCTTCTACTTTGATTTCGTTTGCCACGAAGACACTTAATGCTGGACAAATTATATCCAAGTTGCATGTTATTGAGCTGGGTGCACAACCAGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGACTTCCCAGTTGCCATGCAGATATCCCACAAATACAATTTGATTTATGTGATCACGAAACTTGGTCTCCTATTTGTCTATGATTTGGAGACGGCCACTGCTGTGTATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACGTCAGAAGCTACATCAGTTGGAGGCTTTTATGCCATTAACAGGAGAGGCCAGGTGTTATTGGCTACTGTTAATGAGCAAACAATTGTGAATTTTGTCAGTGGTCAATTAAATAATTTGGAGCTAGCCGTCAATCTTGCCAAGAGAGGAAACCTTCCAGGTGCTGAGAAGCTGGTTGTTGAACGTTTCCATGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAGTCCCCGCAAGGAATCCTTCGTACACCTGATACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGACAAACTCCTCCACTCTTGCAGTATTTTGGAACCCTTTTAACTAGAGGAAAGCTGAATGCCTTTGAATCATTAGAATTGTCACGGCTGGTTGTGAATCAGAACAAGAAAAATCTTTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAACTAGGAGATCTTGTAAAGACTGTGGACAATGACCTTGCCTTAAAAATATATATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCGTTTGCTGAGCGAAGGGAGTTTGACAAGATTCTCATATATTCTAAGCAGGTTGGGTACACACCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTTGTCCTCTTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAACTTGATCCGTGAGGCTACTGCCTTTCTCCTAGATGTTTTGAAGCCAAATTTACCTGAACATGGTTTCCTTCAAACAAAGGTTTTGGAGATAAATCTGGTAACGTTTCCCAATGTTGCTGATGCTATTTTGGCTAATGGCATGTTCAGCCATTATGATCGTCCACGTATTGCCCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAACATTACACAGAGTTGCCAGATATAAAACGTGTGATAGTTAATACACATGCAATTGAGCCACAGTCACTTGTTGAGTTTTTTGGTACTCTGTCACGAGAATGGGCCTTAGAGTGCATGAAAGATCTGTTACTGGTCAATCTTAGAGGCAACCTACAGATAATTGTTCAGGTTGCTAAAGAATATTGTGAACAGTTGGGCGTTGATGCTTGCATTAAGATTTTTGAGCAATTCAGGTCCTATGAAGGACTCTATTTCTTCCTTGGTTCATATTTAAGCTCCAGTGAGGATCCCGACATCCACTTCAAGTACATTGAGGCAGCAGCAAAGACTGGACAAATCAAAGAGGTCGAGCGTGTGACTAGAGAATCAACTTTCTATGATCCTGAGAAAACGAAGAACTTTCTAATGGAAGCTAAGCTTCCCGATGCACGACCTCTTATTAATGTTTGCGATCGATTTGGATTTGTTCCTGATCTGACACACTATCTATACACAAATAACATGCTTCGCTACATTGAAGGATATGTTCAGAAGGTGAACCCAGGGAATTCTCCTCTAGTTGTTGGGCAGCTGCTAGATGATGAGTGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCATTGCTGCCGGTGGAGCCACTGGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGTTTGCTTTCACAGTTTCTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGCACATGTTCATAATGCTCTGGGTAAGATCATCATTGATAGCAACAACAACCCAGAACATTTTCTCACTACAAACCCATACTATGATTCTCGAGTTGTGGGAAAATATTGTGAAAAACGTGATCCTACCTTGGCCGTTGTGGCTTATAGGCGAGGACAATGTGATGATGAACTTATCAATGTGACAAACAAAAATTCTTTGTTCAAACTACAAGCAAGGTATGTTGTTGAGAGGATGGATGGTGACCTTTGGGAGAAAGTTCTTAACCCTGATAATGCCTACAGAAGACAGCTTATTGATCAAGTTGTATCTACTGCTCTGCCTGAAAGCAAGAGCCCTGAACAAGTCTCTGCAGCTGTTAAGGCTTTCATGACTGCTGATCTACCTCATGAATTGATTGAGCTTCTTGAGAAGATTGTGCTTCAGAATTCTGCCTTCAGTGGGAACTTTAATTTGCAGAATCTGCTTATCTTGACAGCAATAAAGGCTGATACATCCAGAGTCATGGATTATATAAATAGACTGGATAATTTTGATGGTCCTGCAGTTGGAGAAATGGCTGTTGAGGCTCAGTTATATGAAGAAGCATTTGCAATTTTTAAGAAGTTCAACTTAAATGTTCAAGCAGTCAATGTCTTGCTAGATAATATTCATAGCATTGATAGAGCTGAGGAGTTTGCTTTCCGAGTTGAAGAGGATGCTGTATGGAGTCAGGTGGCCAAGGCTCAACTCAGGGAAGGGCTAGTAAGTGAAGCAATTGAGTCATTTATACGAGCAGATGATGCCACACAATTTTTGGATGTTATCCGTGCTGCTCAAAATACCAATGCTTACAATGACTTGGTGAGATACTTGCTGATGGTAAGGCAAAAGACAAAAGAACCCAAGGTGGACAGTGAGCTCATTTATGCTTATGCAAAGATCGACAGGCTCAGTGACATTGAGGAGTTCATTCTTATGCCGAATGTGGCCAATCTTCAAAATGTTGGTGACCGATTGTATGATGAAGAGCTATATGAGGCTGCAAAAATTATATTTGCTTTTATATCTAACTGGGCCAAGTTAGCAGTCACACTTGTGAAGTTGAAACAGTTCCAAGGTGCTGTTGATGCAGCAAGGAAAGCTAACAGCTCAAAAACATGGAAGGAAGTTTGCTTCGCGTGTGTTGATGCAGAGGAGTTCCGTTTGGCCCAGATATGTGGGTTGAACATTATTGTTCAGGTGGATGACTTGGAAGAGGTCAGTGAATTTTACCAAAATAGAGGTTGCTTCAACGAGCTAATATCCCTCATGGAGAGTGGTTTAGGATTAGAACGGGCACATATGGGCATCTTTACCGAGTTAGGAGTTCTGTACGCTAGATACCGTCCTGAGAAACTTATGGAACATATCAAACTATTTGCAACCCGACTCAATATTCCAAAACTCATAAGAGCTTGTGATGAACAACAACATTGGAAGGAACTGACCTATTTGTATATCCAATATGATGAGTTTGACAATGCAGCAACAACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTATTGTCAAAGTTGCTAATGTGGAGTTGTATTACAAGTCTGTTCATTTCTATTTGCAAGAGCATCCAGATCTTCTAAACGATGTTTTGAATGTCCTTGCACTTCGTGTTGACCATGCACGCGTTGTTGATATCATGCGAAAGGCTGGTCATCTCCGTCTTGTCAAGCCATACATGGTTGCAGTTCAGAGCAATAACGTGTCTGCTGTTAATGAAGCCCTGAATGAGATATATGTGGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCACGACAACTTTGACCAAATAGGCCTGGCACAGAAGATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTATAAGAAGGCTGGTAGGTGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACGGCCTCACAATCTGGTGAACGTGAACTTGCTGAGGAGTTACTTGTTTATTTCATTGATCAGGGAAAAAAGGAATGCTTTGCCTCGTGTCTATTTGTTTGCTATGATTTAATCAGGGCAGACGTTGCTCTTGAACTGGCTTGGATCCACAATATAATTGACTTTGCCTTCCCATACGTGTTACAGCTTCTCCGCGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGACAAAATTGAAGCACAGAAAGAAGTGAAGGCTAAAGAACAAGAAGAGAAGGAAGTAATTCAACAACAGAATATGTATGCTCAATTGTTGCCTCTTGCTTTGCCTGCACCACCAATGCCCGGAATGGGAGGAGGCTATGCCCCTCCCCCTCCAATGGGTGGGATGGGGATGCCTCCAATGCCTCCTTTTGGCATGCCACCCATGGGCAGCAGCTACTGA 5109 0.4242 MAAAANAPITMREALTLPSIGINPQFITFTHVTMESDKYICVRETSPQNSVVIVDMSMPMQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWITPKLLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQLKVPGNENPSTLISFATKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYNLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPLDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDACIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESTFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNSPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLSQFLEHLVSEGSQDAHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLNPDNAYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADTSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAEEFAFRVEEDAVWSQVAKAQLREGLVSEAIESFIRADDATQFLDVIRAAQNTNAYNDLVRYLLMVRQKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEFYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFATRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIVKVANVELYYKSVHFYLQEHPDLLNDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADVALELAWIHNIIDFAFPYVLQLLREYTGKVDELVKDKIEAQKEVKAKEQEEKEVIQQQNMYAQLLPLALPAPPMPGMGGGYAPPPPMGGMGMPPMPPFGMPPMGSSY* 1703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0385 1702 SUPERFAMILY ARM repeat 346 501 IPR016024 -
Lja6g0385 1702 SUPERFAMILY ARM repeat 1197 1532 IPR016024 -
Lja6g0385 1702 Coils Coil 1618 1653 - -
Lja6g0385 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1289 1435 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 552 698 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 SUPERFAMILY ARM repeat 902 1067 IPR016024 -
Lja6g0385 1702 SUPERFAMILY ARM repeat 458 794 IPR016024 -
Lja6g0385 1702 SUPERFAMILY ARM repeat 1051 1196 IPR016024 -
Lja6g0385 1702 Gene3D - 1543 1639 - -
Lja6g0385 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 994 1139 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 848 987 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 PANTHER CLATHRIN HEAVY CHAIN RELATED 3 1701 - -
Lja6g0385 1702 Coils Coil 1478 1498 - -
Lja6g0385 1702 Pfam Clathrin-H-link 370 435 - -
Lja6g0385 1702 Gene3D - 1 378 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lja6g0385 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1143 1284 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 PANTHER CLATHRIN HEAVY CHAIN 3 1701 - -
Lja6g0385 1702 PIRSF CHC 4 1687 IPR016341 GO:0016192|GO:0032051|GO:0071439
Lja6g0385 1702 Pfam Clathrin, heavy-chain linker 345 368 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lja6g0385 1702 Gene3D Tetratricopeptide repeat domain 1057 1197 IPR011990 GO:0005515
Lja6g0385 1702 Gene3D Tetratricopeptide repeat domain 1198 1537 IPR011990 GO:0005515
Lja6g0385 1702 Gene3D Tetratricopeptide repeat domain 903 1056 IPR011990 GO:0005515
Lja6g0385 1702 SUPERFAMILY Clathrin heavy-chain terminal domain 6 344 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lja6g0385 1702 Pfam Clathrin propeller repeat 21 56 IPR022365 -
Lja6g0385 1702 Pfam Clathrin propeller repeat 155 198 IPR022365 -
Lja6g0385 1702 Pfam Region in Clathrin and VPS 851 984 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 Pfam Region in Clathrin and VPS 1148 1282 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 Pfam Region in Clathrin and VPS 1290 1433 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 Pfam Region in Clathrin and VPS 702 841 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 Pfam Region in Clathrin and VPS 558 691 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 Pfam Region in Clathrin and VPS 994 1132 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 Pfam Region in Clathrin and VPS 1441 1580 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1438 1581 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 701 843 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 SMART CLH_2 1143 1284 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 SMART CLH_2 552 694 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 SMART CLH_2 994 1139 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 SMART CLH_2 1289 1435 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 SMART CLH_2 848 987 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 SMART CLH_2 1438 1597 IPR000547 GO:0006886|GO:0016192
Lja6g0385 1702 SMART CLH_2 701 843 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0385 Lja-Chr6 9685469 9697511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0385 K04646 - gmx:547986 3154.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0385 6 9685469 9697511 Lja6g0385 6 9685469 9697511 ECH
Lja6g1097 6 27778105 27789908 Lja6g0385 6 9685469 9697511 ECH
Lja6g0385 6 9685469 9697511 Lja6g0385 6 9685469 9697511 PCT