Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0956 ATGGCTTCTCTCACCGCATCTAACTGCGCCGCTCTCAGAACCGTTAACTTCGCCGCCGCTAACCGTAAAATCGCTCAGATCCGTCAATGGTCTCCGATTCTCACCCATCTCCGCCCCCTCTCTGGTCTCCGATGCGGATCCAACCATTCGTTTAGCTCCTCCTCCTCCGGCGTGAGAGCACAGGTTGCTACTCTGGAGCAAGCGGGAACCGGAGCACCTTCGAAAGTGGATGCGCCGGTTGTTGTTGTAACCGGAGCTTCCAGAGGTATTGGCCGAGCCATTGCGCTCTCGTTGGGGAAAGCGGGTTGCAAGGTCCTTGTCAACTATGCAAGGTCATCCGAGGAAGCAGAAGAGGTTTCCAAAGAGATTGAGGCATTTGGTGGGCAAGCTATAACATTTAAGGGAAATGTTTCGAATGAGGATGACGTGGAGTCTATGATTAAAGCTGCAGTTAATACTTGGGGAACTGTTGATATATTGATAAATAATGCAGGAATAACGAAAGATGGTTTATTGATGAGAATGAAGAAATCCCAATGGCAGGATGTTATTGATATAAATCTCACTGGTGTTTTTCTTTGCACACAGGCTGCCGCAAAGATTATGATGAAGAATAGGAAGGGAAGAATAATCAATATTGCATCAGTTGTTGGCTTGGTTGGCAATGTTGGACAAGCTAATTATAGTGCTGCCAAAGCAGGAGTAATTGGCCTGACAAAAACTGTCGCAAAGGAATATTCTAGCAGAGGCATCACTGTTAATGCAGTTGCTCCAGGGTTTATTGCATCTGACATGACTGCCAAGCTAGGAAATGATATTGAGAAAAAGATTTTGGAGACAATCCCATTAGGAAGATATGGCCAACCTGAAGAAGTTGCTGGGCTGGTGGAATTCTTGGCTCTTAATCAAGCTGCCAGTTACATCACTGGACAGGTTTTAACCATTGATGGAGGTATGGTGATGTAA 966 0.4607 MASLTASNCAALRTVNFAAANRKIAQIRQWSPILTHLRPLSGLRCGSNHSFSSSSSGVRAQVATLEQAGTGAPSKVDAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSEEAEEVSKEIEAFGGQAITFKGNVSNEDDVESMIKAAVNTWGTVDILINNAGITKDGLLMRMKKSQWQDVIDINLTGVFLCTQAAAKIMMKNRKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYSSRGITVNAVAPGFIASDMTAKLGNDIEKKILETIPLGRYGQPEEVAGLVEFLALNQAASYITGQVLTIDGGMVM* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0956 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 321 IPR036291 -
Lja6g0956 321 CDD BKR_SDR_c 80 320 - -
Lja6g0956 321 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4-LIKE 13 321 - -
Lja6g0956 321 Pfam Enoyl-(Acyl carrier protein) reductase 85 319 - -
Lja6g0956 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 228 247 IPR002347 -
Lja6g0956 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 216 IPR002347 -
Lja6g0956 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 166 IPR002347 -
Lja6g0956 321 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 215 243 IPR020904 GO:0016491
Lja6g0956 321 PRINTS Glucose/ribitol dehydrogenase family signature 155 166 IPR002347 -
Lja6g0956 321 PRINTS Glucose/ribitol dehydrogenase family signature 249 266 IPR002347 -
Lja6g0956 321 PRINTS Glucose/ribitol dehydrogenase family signature 282 302 IPR002347 -
Lja6g0956 321 PRINTS Glucose/ribitol dehydrogenase family signature 80 97 IPR002347 -
Lja6g0956 321 PRINTS Glucose/ribitol dehydrogenase family signature 202 218 IPR002347 -
Lja6g0956 321 PRINTS Glucose/ribitol dehydrogenase family signature 228 247 IPR002347 -
Lja6g0956 321 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 13 321 - -
Lja6g0956 321 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 79 264 - -
Lja6g0956 321 Gene3D - 78 321 - -
Lja6g0956 321 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 81 320 IPR011284 GO:0004316|GO:0006633|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0956 Lja-Chr6 21336216 21345246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0956 6 321 Acyl Lipid Metabolism Gene Families AT1G24360 63.438 6.20e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0956 K00059 - gmx:100806814 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0956 6 21336216 21345246 Lja4g1149 4 10160529 10161494 PCT