Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1149 ATGTTGTCTTCTCGTAGCCTTTTCGCAACCCTCACGGCTTCTTTCACCTCATCCAACTGCATCGCTCTCCGAACCCTTAACACCGGCGCAGCCGCCGGTAACGGTAAATATAAGATCGCTCAGATCCGCCAATGGTCTCCTCCGATTCTCACCCATCTCTGCCTCCTCTCTGGTCTTCACTGCAGATCCAACCATTCGTTTAGCTTCTCCGGCATAGCACCCCCGAAAGTGGACGCGCCGGTTGTAGTTGTAACCGGAGCCTCCAGGGGTATTGGCCGAGCAATTGCCCTCACGTTGGGGAAAGCAGGTTGCAAGGTCCTTGTCCACCATGCAAGGTGGACATCCAAGGATACTGCAGAGGAGGTTTCCAAAGAGATTGAGTTTCTTGGTGGGCAAGCTATAACGTTCGCCGGAGATGTTTCGGATGAAACTGACGTGGAAGCTATGGTTAAAACTGCAGTTAGTACTTGGGGAACTGTTGATGTATTGATAAACAATGAAGCAATAGCAACAAAAGGTTCAACATTGATGAATACGACAAAAGCCCAATTGCAGAATGTTCTGAAAGTAAATGTCACTGGTGCTTTTCTTTGCACACAGGCTGCTGTGAAGATTATGGTGAAGAATAGGAAGGGAAGGATAATCAATATTGCATCAAGTGTTAATGGATTTGTTGGCGATATTGCAAAAGGAGGAGTAATTGGCCTAACAAAATCTGTGGCAAAGGAATTTGGTAGCAGAAACATCACTGTTAATGTAGTTGCTCCAGGGTTTATTGTATCTGATGACATGACTGCCAAGGTAGGAAATGATGAAGTTGAGAAAAAGATTTTGGAGATAATCCCGTTAGGAAGATATGGCCAACCTGAAGAAGTTGCTGGACTGGTGGAATTCTTGGCTCTTAATCAAGCTGCCAGTTACATCACTGGACAGGTTTTCGCCATTGATGGGGGTCTGGAGATGTAA 966 0.4617 MLSSRSLFATLTASFTSSNCIALRTLNTGAAAGNGKYKIAQIRQWSPPILTHLCLLSGLHCRSNHSFSFSGIAPPKVDAPVVVVTGASRGIGRAIALTLGKAGCKVLVHHARWTSKDTAEEVSKEIEFLGGQAITFAGDVSDETDVEAMVKTAVSTWGTVDVLINNEAIATKGSTLMNTTKAQLQNVLKVNVTGAFLCTQAAVKIMVKNRKGRIINIASSVNGFVGDIAKGGVIGLTKSVAKEFGSRNITVNVVAPGFIVSDDMTAKVGNDEVEKKILEIIPLGRYGQPEEVAGLVEFLALNQAASYITGQVFAIDGGLEM* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1149 321 PRINTS Glucose/ribitol dehydrogenase family signature 247 264 IPR002347 -
Lja4g1149 321 PRINTS Glucose/ribitol dehydrogenase family signature 158 169 IPR002347 -
Lja4g1149 321 PRINTS Glucose/ribitol dehydrogenase family signature 226 245 IPR002347 -
Lja4g1149 321 PRINTS Glucose/ribitol dehydrogenase family signature 282 302 IPR002347 -
Lja4g1149 321 PRINTS Glucose/ribitol dehydrogenase family signature 81 98 IPR002347 -
Lja4g1149 321 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 73 321 - -
Lja4g1149 321 Gene3D - 64 319 - -
Lja4g1149 321 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 73 321 - -
Lja4g1149 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 220 IPR002347 -
Lja4g1149 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 226 245 IPR002347 -
Lja4g1149 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 169 IPR002347 -
Lja4g1149 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 319 IPR036291 -
Lja4g1149 321 Pfam Enoyl-(Acyl carrier protein) reductase 86 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1149 Lja-Chr4 10160529 10161494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1149 22 319 Acyl Lipid Metabolism Gene Families AT1G24360 56.563 7.29e-108 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1149 K00059 - gmx:100809809 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0956 6 21336216 21345246 Lja4g1149 4 10160529 10161494 PCT