Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0920 ATGATGGATTGCTGCATAATCAGCAAGCTCAAAACCCAACCCTCATGGTTCATCGCGTTCTTCGCCTTGGGCCTTTTCACCATTCTCAGATTCACTTCCATTTTCCTCAGATGGGTTTACGTCAATTTCCTCAGAGCACCCAAAAACCTCAAAAGCTATGGATCTTGGGCACTCGTCACGGGACCCACCGACGGCATTGGTAAGAGCTTCGCCTTCGAGCTCGCTCGCAAGGGCCTCAACCTCGTCCTTGTCGGTCGGAGCCCTGACAAGCTCAAAGACGTGTCGGATTCCATTGCGACAAAGTTCGGGAAAACCGAGGTTAGGACTGTCGTTGTTGATTTCGCCGGCGATCTCGATGAGGGTGTGAGGAAGATTGAGGAAGCGATTCAAGGGCTTGATGTTGGGGTTCTGATTAACAACGTGGGAATCTCGTACCCTTATGCGAGATTCTTCCATGAAGTGGATGAGGAGCTTCTGAATAATCTGATTAAGGTGAATATCGTTGGAACTACCAAGGTCACGCAAGCTGTTCTTCCCGGGATGATTAAGAGGAAGAAAGGTGCGGTTGTTAACATTGGTTCTGGGGCTGCGATTGTGATTCCTTCCGATCCGCTCTATGCTGTTTATGCAGCCACCAAAGCGTACATCGATCAATTTTCCAGATGTCTCTATGTTGAATACAAGAAGAGTGGGATTGACGTGCAGTGTCAGGTTCCGTTGTATGTGGCAACAAAGATGGCATCAATTAAGAAATCTTCATTCTTCGTTCCATCAACAGATGGGTATGCGAGAGCAGGTGTACGATGGATCGGACATGACCCTCGTTGCACACCGTATTGGCCTCATACCCTTCTTTGGGCCTTGGCAGCGTCGCTGCCTGAGTTTGTTATTGATGCTTGGCGCCTCAGGTTTTGTTTGGCTATCCGAAAGAGGGGACAGCTCAAGGAATCAAGGAAGAAGGAATAG 966 0.4886 MMDCCIISKLKTQPSWFIAFFALGLFTILRFTSIFLRWVYVNFLRAPKNLKSYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRSPDKLKDVSDSIATKFGKTEVRTVVVDFAGDLDEGVRKIEEAIQGLDVGVLINNVGISYPYARFFHEVDEELLNNLIKVNIVGTTKVTQAVLPGMIKRKKGAVVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKKSSFFVPSTDGYARAGVRWIGHDPRCTPYWPHTLLWALAASLPEFVIDAWRLRFCLAIRKRGQLKESRKKE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0920 321 Gene3D - 50 270 - -
Lja6g0920 321 PRINTS Glucose/ribitol dehydrogenase family signature 181 197 IPR002347 -
Lja6g0920 321 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Lja6g0920 321 PRINTS Glucose/ribitol dehydrogenase family signature 56 73 IPR002347 -
Lja6g0920 321 PRINTS Glucose/ribitol dehydrogenase family signature 209 228 IPR002347 -
Lja6g0920 321 PRINTS Glucose/ribitol dehydrogenase family signature 132 143 IPR002347 -
Lja6g0920 321 CDD 17beta-HSD1_like_SDR_c 54 296 - -
Lja6g0920 321 PIRSF 11-beta-HSD1 7 315 - -
Lja6g0920 321 PANTHER RH59310P 5 320 - -
Lja6g0920 321 Pfam short chain dehydrogenase 56 248 IPR002347 -
Lja6g0920 321 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 5 320 - -
Lja6g0920 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 312 IPR036291 -
Lja6g0920 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 228 IPR002347 -
Lja6g0920 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 187 195 IPR002347 -
Lja6g0920 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 143 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0920 Lja-Chr6 20295678 20298343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0920 2 321 Lipid Metabolism Gene Families AT1G67730 62.187 4.26e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0920 K10251 - gmx:100814139 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0791 4 6551687 6554631 Lja6g0920 6 20295678 20298343 PCT