Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0791 ATGCTTCCCATAACATGCAGCAGCCTGCACTTCCCAGCACCACTGCTCATCATCATCATCTCATGCCTCGGTTTAATCGTCATCCTCAACCACCTCATCTCCCTCTTCAAGTGGATCTTCCACACGTGTTTCAGGCCTGAGACCGACCTCGCCGGAACCTACGGCTCGTGGGCTCTGGTCACCGGCGCCACGGATGGCATCGGAAAAGCCATGGCCCACGAGCTCGCCCGGAAAGGCCTCAATCTCATCCTCGTCAGCAGAACTGCCAAGAAGCTCGAAATGGTTGCATGCGAGATCCGAGATAAGCACCCTGGCACCCGCATTGAGACCATCCAGGTGGATTTCTCCGGTGAGTTCTCAGCGGGGCTCCGGCGGATTACGGAGGTGGCAATGGAGCTGGATCTTGGTGTTCTGATCAACAATGTTGGGGTCACGTATCCGGGGGCGATGTTCTTCCACGAGGTGGAGGAGGAGGTGTGGAGGAACCTTGTGAGGGTTAACATTGAAAGCACAACGAGAGTGACGAAAGCTGTTTTATGTGGAATGTTACAGAGGAAGAGGGGTGCCATTGTTAACATTGGTTCTGGTGCTGGGGTGGTTGCGCCTTCACACCCTCTCTTTACGATCTATGCAGCAACAAAAGCCTATGTGCATCAGTTTTCAAGATCTCTCAATATGGAATATGGACAACATGGGATCCACGTGCAATGCCAGGTACCTCTGTACGTTGCGACGAAAATGGTGTCAAGGGTAGCATCAATTAAGCAAAATTCGCTGTTCATACCAACACCTGAAGGTTATGCAAGAGCTGCAATTCGTGCAATTGGGTATGAACCAATTTCCACACCTTACTGGGCTCACTCAATTCAGTGGTGCTTCGCTCGCTTAATCCCTGATCCGCTTCTTGATGCTTGGCGCTTGTCCATTGGTATGCGTCGCAGGAATTATATAAAGGGACAGAAGAACTAA 969 0.5139 MLPITCSSLHFPAPLLIIIISCLGLIVILNHLISLFKWIFHTCFRPETDLAGTYGSWALVTGATDGIGKAMAHELARKGLNLILVSRTAKKLEMVACEIRDKHPGTRIETIQVDFSGEFSAGLRRITEVAMELDLGVLINNVGVTYPGAMFFHEVEEEVWRNLVRVNIESTTRVTKAVLCGMLQRKRGAIVNIGSGAGVVAPSHPLFTIYAATKAYVHQFSRSLNMEYGQHGIHVQCQVPLYVATKMVSRVASIKQNSLFIPTPEGYARAAIRAIGYEPISTPYWAHSIQWCFARLIPDPLLDAWRLSIGMRRRNYIKGQKN* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0791 322 PIRSF 11-beta-HSD1 6 319 - -
Lja4g0791 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 144 IPR002347 -
Lja4g0791 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 188 196 IPR002347 -
Lja4g0791 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 210 229 IPR002347 -
Lja4g0791 322 CDD 17beta-HSD1_like_SDR_c 55 298 - -
Lja4g0791 322 PANTHER RH59310P 17 317 - -
Lja4g0791 322 PRINTS Glucose/ribitol dehydrogenase family signature 182 198 IPR002347 -
Lja4g0791 322 PRINTS Glucose/ribitol dehydrogenase family signature 57 74 IPR002347 -
Lja4g0791 322 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Lja4g0791 322 PRINTS Glucose/ribitol dehydrogenase family signature 133 144 IPR002347 -
Lja4g0791 322 PRINTS Glucose/ribitol dehydrogenase family signature 210 229 IPR002347 -
Lja4g0791 322 Pfam short chain dehydrogenase 57 251 IPR002347 -
Lja4g0791 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 309 IPR036291 -
Lja4g0791 322 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 17 317 - -
Lja4g0791 322 Gene3D - 50 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0791 Lja-Chr4 6551687 6554631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0791 14 315 Lipid Metabolism Gene Families AT1G24470 55.116 8.38e-113 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0791 K10251 - mnt:21410235 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0791 4 6551687 6554631 Lja4g0791 4 6551687 6554631 ECH
Lja4g0791 4 6551687 6554631 Lja6g0920 6 20295678 20298343 PCT