Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0906 ATGGCGAAATATTCTAAATTCAGTTCAAAACGGTCTATTAGGAGGAGCTCATATCATGGATCTGCTGGCTCTTCATCATCTAATTCTTCTAACTATGGTTATGGTGGCGGCGGATACGGCGCATACCCGCCACAATCACCACAACACCACCCTCAGCAAAGTCCATATCCAACAACACCATCAGCTCCATTTTATGACTATGCAGCACAGCCAACAACTACAAAGAAGTTGGATAGGAAATATTCCAGAATAGCTGATGATTACCGTTCACTCGATGAGGTTACTGCTGCTCTTGCAAAAGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATGTCACAAAGAGCAATGAGTGGACAGGGACGAAGTCATTCAATCGAAAAAGTTTACATCACATTGGAGATTATCAGAATCCTTATGAGCAAGCAATCTCTATTATTGGAAAGACTCTATCTTCTTTTGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCTACTCATGATCAAGATGTATTTAGCTTCTATTCAGAAGATGAGTTTTGCAATGGGTTTGAAGATGTTTTGACACGATACAGAGAAATAGTTCCTTACCTAAAACTTGCAGGACCCACTTCATTTGCTCCTATTATTGAAATGGCCATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTTTTGCTAATAATTGCAGATGGTCAGGTGACCAGAAGCATTGATACAAAGCACGGCCAATTAAGTTCACAGGAACAGAAGACAATAGATGCAATTGTAAAAGCCAGCGATTATCCACTGTCAATAGTTGTGGTAGGAGTTGGAGATGGACCCTGGGATATGATGAGGGAATTTGATGATAACATCCCTTCTCGGGCATTCGACAATTTTCAGTTTGTGAATTTCACTGATATAATGAAGAGGAATGTAAATGCAATTAGAAAAGAGACAGAGTTTGCCCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAAGCAACCATAGAGCTTGGATTATTGGGTGCACGGAGGGGTCATTCACCAAATAGGGTTCCTCTTCCCCCACCTTTTCATAATCGGATTGCTTCTATCGGCGCAAGATCTTCTTGTTCAAACAATTTTCAGCTGAGTGCACCTAAAATTACTGGCTGTGGTAGTGGTGTGCAAACACAACCAGCTACAAGCTTTCCAATGGAAACAGAACCATCTCTACTTGATGATAATAAGGTTTGTCCGATTTGTCTCACCAATGGGAAAAATATGGCCTTTGGTTGCGGGCATCAGACTTGTTATGGATGTGGGGAAGACCTCCAATACTGTCCCGTCTGCAGGAGCACAATTCATACCAGGATAAGGCTTTACTAG 1374 0.4134 MAKYSKFSSKRSIRRSSYHGSAGSSSSNSSNYGYGGGGYGAYPPQSPQHHPQQSPYPTTPSAPFYDYAAQPTTTKKLDRKYSRIADDYRSLDEVTAALAKAGLESSNLIVGIDVTKSNEWTGTKSFNRKSLHHIGDYQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQDVFSFYSEDEFCNGFEDVLTRYREIVPYLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSIDTKHGQLSSQEQKTIDAIVKASDYPLSIVVVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTDIMKRNVNAIRKETEFALAALMEIPSQYKATIELGLLGARRGHSPNRVPLPPPFHNRIASIGARSSCSNNFQLSAPKITGCGSGVQTQPATSFPMETEPSLLDDNKVCPICLTNGKNMAFGCGHQTCYGCGEDLQYCPVCRSTIHTRIRLY* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0906 457 SMART VWA_4 105 308 IPR002035 -
Lja6g0906 457 ProSiteProfiles Zinc finger RING-type profile. 414 447 IPR001841 -
Lja6g0906 457 CDD RING-HC_RGLG_plant 413 457 IPR045317 GO:0061630|GO:0070534
Lja6g0906 457 PANTHER COPINE (CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING PROTEIN) FAMILY-RELATED 13 457 - -
Lja6g0906 457 SMART ring_2 414 446 IPR001841 -
Lja6g0906 457 MobiDBLite consensus disorder prediction 1 65 - -
Lja6g0906 457 Pfam Copine 130 343 IPR010734 -
Lja6g0906 457 MobiDBLite consensus disorder prediction 14 34 - -
Lja6g0906 457 SUPERFAMILY vWA-like 106 290 IPR036465 -
Lja6g0906 457 Pfam Zinc finger, C3HC4 type (RING finger) 411 451 - -
Lja6g0906 457 PANTHER COPINE FAMILY PROTEIN 1 13 457 - -
Lja6g0906 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 457 IPR013083 -
Lja6g0906 457 SUPERFAMILY RING/U-box 405 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0906 Lja-Chr6 19761789 19767960 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0906 K16280 - gmx:100798816 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0779 4 6467447 6471471 Lja6g0906 6 19761789 19767960 PCT