Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0779 ATGATTTTGACATGGGTTTCGCAATTGCAGCTTGATACTTGGACAATTTTGGTTGTGATTTTGTGCTTTATTGGGTTGATTCTGAAAGAAACTGTAATGGGGGGTAAGAGTTCAAAAGGGTCTGGTAGGAGGCATGTTTCATCATATGACTCTGCTGGTTCTTCATCTTCATGGGAAAACTATGGAATTCCGCAGCAACCATACGGATACCCATCACAAAATTCACATCAATCAACGCCTCTTCACCACCGTGCACCGGCCGCAGCGGCGACCGCTCCGTTTCAGGACTATGCACAGCCAAAAAGGAGGTTAGATAGGAGATATTCAAGGATAGCTGATGATTACCATTCACTGGATGAGGTTACTGCTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTGGGCATTGATTTCACAAAGAGCAACGAATGGACAGGGAAGATGTCCTTCAATCGAAAAAGTTTACATCACATTGGAAGTGGGCCTAATCCTTATGAACAAGCAATCACAATTATTGGGAAAACTTTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGCTTCCATTCAGATGAGAGTTTTTGCAATGGATTTGAGGAAGTTTTGTCAAAATATAGAGAGATTGTTCCTCGTCTTCGACTAGCAGGACCTACCTCATTTGCCCCTATGGTTGAGATGGCCATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATCGCTGATGGACAGGTTACTAGAAGCGTTGACACGCAGCGCGGCCAGCTAAGTCCACAGGAACAGAGAACAATTGATGCAATTGTAAAAGCCAGCGAGTATCCACTGTCGATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAGTTTGATGATAACATTCCAGCTCGAGCCTTTGACAATTTTCAGTTTGTGAATTTTACAGAGATAATGTCAAGCAATGTAGATTCAAGCAGAAAAGAGGCAGCATTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGTGCGCGGAGGGGACATTCACCGGACCGTGTTCCTCTACCTCCACCTCGTTATGATAGAGCTTCCTCTAGCAGCGCCGCAACATCTTTCCGTTCAAACAGTTTTCAGCAGAGTGCTCATACATATACTGGTTACAACAATGAAGTTAGCACAGAACCATCTTCAGGTGGCTTATATGACAACAAGGTTTGCCCTATTTGTCTTACTAATGGGAAGGATATGGCTTTTGGTTGCGGGCATCAGACTTGTTGTGATTGTGGAGAAAGCCTCGAATCCTGCCCTATTTGCCGAAGTGCTATCACCACCAAAATAAGGCTTTTCTAG 1434 0.4358 MILTWVSQLQLDTWTILVVILCFIGLILKETVMGGKSSKGSGRRHVSSYDSAGSSSSWENYGIPQQPYGYPSQNSHQSTPLHHRAPAAAATAPFQDYAQPKRRLDRRYSRIADDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKMSFNRKSLHHIGSGPNPYEQAITIIGKTLSVFDEDNLIPCFGFGDASTHDQDVFSFHSDESFCNGFEEVLSKYREIVPRLRLAGPTSFAPMVEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQRGQLSPQEQRTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSSNVDSSRKEAAFALAALMEIPSQYKATIDHGILGARRGHSPDRVPLPPPRYDRASSSSAATSFRSNSFQQSAHTYTGYNNEVSTEPSSGGLYDNKVCPICLTNGKDMAFGCGHQTCCDCGESLESCPICRSAITTKIRLF* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0779 477 Pfam Zinc finger, C3HC4 type (RING finger) 431 471 - -
Lja4g0779 477 MobiDBLite consensus disorder prediction 35 58 - -
Lja4g0779 477 PANTHER COPINE FAMILY PROTEIN 1 55 477 - -
Lja4g0779 477 MobiDBLite consensus disorder prediction 66 81 - -
Lja4g0779 477 Pfam Copine 157 370 IPR010734 -
Lja4g0779 477 CDD RING-HC_RGLG_plant 433 477 IPR045317 GO:0061630|GO:0070534
Lja4g0779 477 SUPERFAMILY RING/U-box 428 473 - -
Lja4g0779 477 MobiDBLite consensus disorder prediction 41 58 - -
Lja4g0779 477 MobiDBLite consensus disorder prediction 372 403 - -
Lja4g0779 477 PANTHER COPINE III-LIKE 55 477 - -
Lja4g0779 477 ProSiteProfiles Zinc finger RING-type profile. 434 467 IPR001841 -
Lja4g0779 477 SMART VWA_4 132 335 IPR002035 -
Lja4g0779 477 MobiDBLite consensus disorder prediction 66 85 - -
Lja4g0779 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 477 IPR013083 -
Lja4g0779 477 SUPERFAMILY vWA-like 133 316 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0779 Lja-Chr4 6467447 6471471 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0779 K16280 - gmx:100800161 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0779 4 6467447 6471471 Lja4g0779 4 6467447 6471471 ECH
Lja4g0779 4 6467447 6471471 Lja6g0906 6 19761789 19767960 PCT