Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0562 ATGGCAACTGAGGAGCTTAACAAACCTTCTTCTCTTCCTCCATATCCTGAGATGATAATGAAAGCAATTGAAGCTGTTGGAGACACTGGTGCGAACAAATCAGCCATATCAAACTACATAGAGTCCACCTATGGTGATGTTCCAGCAGGGCACACAACCCTTCTGACCCACCACCTCAACCAGATGAAGGACAGTGGTGAGATTGTGTTCTTCAAGAACAACTACATGAAGCCTGACCCAAATGCCCCACCAAAGAGAGGGCGTGGAAGGCCACCTAAGCCTAAAGACCCAAATGCTCCTGAGGTTACTACTGCTGCTCTGGGGCCACCAAGGCCTAGGGGTCGCCCTCCAAAGGACCCTAATGCTCCACCAAAACCACCAAGTGAGAAAGTTTCAAGTGGGAGGCCTAGAGGGAGGCCAAAGAAGATTGCGAGGTCCGAGGCGGCTTCAACGCCAGGATCCACCGGGAGGCCAAGGGGTAGGCCTCCTAAGGTGAAGCCTCAGATGACTGAAGTGAGTGTTGAACAATAG 531 0.516 MATEELNKPSSLPPYPEMIMKAIEAVGDTGANKSAISNYIESTYGDVPAGHTTLLTHHLNQMKDSGEIVFFKNNYMKPDPNAPPKRGRGRPPKPKDPNAPEVTTAALGPPRPRGRPPKDPNAPPKPPSEKVSSGRPRGRPKKIARSEAASTPGSTGRPRGRPPKVKPQMTEVSVEQ* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0562 176 Gene3D - 7 103 IPR036388 -
Lja6g0562 176 Pfam linker histone H1 and H5 family 13 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja6g0562 176 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lja6g0562 176 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lja6g0562 176 PRINTS High mobility group protein (HMGY) signature 83 95 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lja6g0562 176 PANTHER HISTONE H1 1 172 - -
Lja6g0562 176 PANTHER HMG-Y-RELATED PROTEIN A 1 172 IPR031059 GO:0003677|GO:0005634
Lja6g0562 176 MobiDBLite consensus disorder prediction 110 130 - -
Lja6g0562 176 Pfam AT hook motif 85 93 IPR017956 GO:0003677
Lja6g0562 176 Pfam AT hook motif 110 121 IPR017956 GO:0003677
Lja6g0562 176 Pfam AT hook motif 156 167 IPR017956 GO:0003677
Lja6g0562 176 Pfam AT hook motif 134 144 IPR017956 GO:0003677
Lja6g0562 176 SMART h15plus2 9 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja6g0562 176 SUPERFAMILY "Winged helix" DNA-binding domain 8 86 IPR036390 -
Lja6g0562 176 MobiDBLite consensus disorder prediction 72 176 - -
Lja6g0562 176 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Lja6g0562 176 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Lja6g0562 176 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Lja6g0562 176 SMART AT_hook_2 156 168 IPR017956 GO:0003677
Lja6g0562 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja6g0562 176 PRINTS AT-hook-like domain signature 85 95 IPR017956 GO:0003677
Lja6g0562 176 PRINTS AT-hook-like domain signature 132 142 IPR017956 GO:0003677
Lja6g0562 176 PRINTS AT-hook-like domain signature 108 119 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0562 Lja-Chr6 13547592 13549114 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0562 - - mnt:21409814 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0561 6 13533164 13534543 Lja6g0562 6 13547592 13549114 PCT