Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0561 ATGGCCAACGAAGATGGACAAGTTATTGTGAAACCCTCTTCACTTCCTTCATACCGTGAGATGATTTTGAAGGCGATTGATGGTCGGAACGAAGAGAATGGGTCCAACAAAACTTCAATAGCCAAGTACATAGAATCTACATATGGTGAGTTGCTGCCTCCGGGTCACAAGGTCCTGCTCAACGTGCACCTTGCAAAGATGAGGGACAGTGGGGAGTTAGTGTTTTGGAAAAACAACTACACTAAGCGTGACATTAACGCGCCGCCGCGGCCCCGGGGCCGCGGCAGGCCCCCAAAGCCTAAGGAACAGGGTGCTGTTGTGGAGTCGCCGAGGCCTAGGGGCCGCCCTGCTAAGGACCCGAATGCCCCGCCAAGCTCTCCCAAGGTTAAGGCCTCGGGTGGGAGTGGCAGGCCTAGAGGCCGGCCTAGGAAGACGGCCCAGCCTGGTGAAGCACTTCCGGTCCCAGCTGGGAGTGGGAGGCCCAGAGGTAGACCTCCAAAGATGCAGTGCACATTGACTGAAATTAGTGCTTAA 534 0.5562 MANEDGQVIVKPSSLPSYREMILKAIDGRNEENGSNKTSIAKYIESTYGELLPPGHKVLLNVHLAKMRDSGELVFWKNNYTKRDINAPPRPRGRGRPPKPKEQGAVVESPRPRGRPAKDPNAPPSSPKVKASGGSGRPRGRPRKTAQPGEALPVPAGSGRPRGRPPKMQCTLTEISA* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0561 177 SMART AT_hook_2 159 171 IPR017956 GO:0003677
Lja6g0561 177 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Lja6g0561 177 SMART AT_hook_2 136 148 IPR017956 GO:0003677
Lja6g0561 177 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Lja6g0561 177 SMART h15plus2 12 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja6g0561 177 PRINTS AT-hook-like domain signature 91 101 IPR017956 GO:0003677
Lja6g0561 177 PRINTS AT-hook-like domain signature 134 144 IPR017956 GO:0003677
Lja6g0561 177 PRINTS AT-hook-like domain signature 108 119 IPR017956 GO:0003677
Lja6g0561 177 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 14 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja6g0561 177 SUPERFAMILY "Winged helix" DNA-binding domain 11 92 IPR036390 -
Lja6g0561 177 MobiDBLite consensus disorder prediction 87 115 - -
Lja6g0561 177 MobiDBLite consensus disorder prediction 76 177 - -
Lja6g0561 177 Pfam linker histone H1 and H5 family 16 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja6g0561 177 PANTHER HMG-Y-RELATED PROTEIN A 11 172 IPR031059 GO:0003677|GO:0005634
Lja6g0561 177 PANTHER HISTONE H1 11 172 - -
Lja6g0561 177 Pfam AT hook motif 91 99 IPR017956 GO:0003677
Lja6g0561 177 Pfam AT hook motif 159 168 IPR017956 GO:0003677
Lja6g0561 177 Pfam AT hook motif 136 147 IPR017956 GO:0003677
Lja6g0561 177 Pfam AT hook motif 110 121 IPR017956 GO:0003677
Lja6g0561 177 PRINTS High mobility group protein (HMGY) signature 112 123 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lja6g0561 177 PRINTS High mobility group protein (HMGY) signature 89 101 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lja6g0561 177 PRINTS High mobility group protein (HMGY) signature 125 144 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lja6g0561 177 Gene3D - 10 99 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0561 Lja-Chr6 13533164 13534543 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0561 - - fve:101308614 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0561 6 13533164 13534543 Lja6g0562 6 13547592 13549114 PCT
Lja6g0561 6 13533164 13534543 Lja6g0561 6 13533164 13534543 PCT