Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0529 ATGGCTCACAGCTCTGACGAGGATTCTGATATAAGTGAATCAGAAATAAGCGAGTACGAAGATAAATATTATGAAGAACTGAAAAATGGAAGTCAGAATGTGAAAACCTCAGATGAGACCTTCACTTGTCCATACTGCCCTAAAAAAAGGAAACGGGATTATTTATACAATGAACTCCTTCAACATGCTTCTGGGGTGGGTCAGAGTGGTTCACAAAAGAGAAAGGCAAAAGAAAAGGCTAATCATTTGGCCTTAGTGAAATATTTGGAAAAGGATCTAAAGAATGGAACGAATGGTGATGTTCCATCAAAACCCGCTGATAAAAATGATTCTCAGGTTAATTCTGATGAGCAGTTTGTGTGGCCCTGGATTGGGATTGTAGTTAATATTCCCACTAGACGGACAGAAGACGGGCGCACTGTTGGGGCGAGTGGTTCCAAGCTGAGGGATGAGTACAAAAGCAGGGGTTTCAATCCTGTTCGAGTCAATCCTTTGTGGAATTTCCGAGGTCACACTGGAACTGCTCTTGTGGAATTCAAAAAAGACTGGCCAGGCTTAGATAATGCGTTAGCCTTTGAAAGAGCATATGAATTAGAACATCATGGGAAAAAGGATTGGTTTGCTAATTCTGAACCGAAGGCTGGTCTATATGCCTGGGTTGCCCGAGCAGATGACTACAACAAAATGAACGTCATTGGGGAACATCTGCGGAAGATGGCTGATGTCAAAACCATACCTGAACTCATTGAAGAAGAAGCTCGAAGGCAGAATAGTCTAGTGTCCAATTTGACTAACATTATACAGGTGAAAAACAAGCACTTAAAAGAGATGGAACTAAGATGCTCTGAGACTACGGTCAAAATGGAGATTGCCATATCAGAAAAAGATAAGCTCATTCAAGATTATAATGAAGAGATAAAGAAAATACAGTCAAGTGCTAGGGATCACTTCCAAAGAATTTTTAACGATCATGAGAAGCTTAAATTGCAACTGGAATCTCAGAAAAGCGTGCTTGAGTTGCGAAAAATTGAATTGGAAAAGCGCGAGGCACATAATGAAAGTGAAAGAAAAAAGCTGGCAGAAGATATTGAGGAGAACGCAGTGAAGAATAACTCTCTTCAGATGGCTTCTCTGGAGCAACAGAAATCGGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGAGAAAAAGAAAAACTCCATGCTAAAATCATTCAACTTCAAAAAGAACTGGATATGAAACAAAAGCTGGAATTGGAGATTCAACAGCTAAAAGGATCATTAAGTGTTCTGAAGCACATAGAAGATGATGAAGATGCAGAAGTTCTGAACAAGGTTGATGCTTTACACAAGGATTTGAGAGAAAAGGAGCAGTCACTTCAAGACATAGATGAATTGAACCAAACACTAATCGTCAAAGAGCGGAGGAGTAATACCGAGCTGCAAGAAGCTCGAAAGGAATTGATTGATTACATTAAAGAGACGTCATCTCGAGGCCACATTAAGGTGAAGAGAATGGGGGAACTGGACACTGGACCGTTCCTTGAAGCCATGAAGAAAAGATATAATGAGGAGGAAGCTGAAGAGAGAGCTTCAGAACTGTGTTCATTGTGGGCAGAATATCTGAAGGACCCAGATTGGCATCCATTCAGAGTTGTCATAATTGAAGGGAAAGAAAAGGAGATAATTAAAGATGACGATGAAAAGTTGAATGGCCTAAAAAATGAAATCGGTGAAGGGGCGTATAAAGCAGTGATGACTGCTTTAACAGAGATAAATGATTACAATCCCAGTGGGCGATACATAACCTCAGAATTGTGGAACTATAAAGAGGGAAGGAGAGCAACTCTGAAAGAAGGAGCGCAAGTTCTGTTGAAGCATTGGGAAGTGGTTAAAAGCAAGAGGGGAATGATGTGA 1920 0.4036 MAHSSDEDSDISESEISEYEDKYYEELKNGSQNVKTSDETFTCPYCPKKRKRDYLYNELLQHASGVGQSGSQKRKAKEKANHLALVKYLEKDLKNGTNGDVPSKPADKNDSQVNSDEQFVWPWIGIVVNIPTRRTEDGRTVGASGSKLRDEYKSRGFNPVRVNPLWNFRGHTGTALVEFKKDWPGLDNALAFERAYELEHHGKKDWFANSEPKAGLYAWVARADDYNKMNVIGEHLRKMADVKTIPELIEEEARRQNSLVSNLTNIIQVKNKHLKEMELRCSETTVKMEIAISEKDKLIQDYNEEIKKIQSSARDHFQRIFNDHEKLKLQLESQKSVLELRKIELEKREAHNESERKKLAEDIEENAVKNNSLQMASLEQQKSDENVMKLAEDQKREKEKLHAKIIQLQKELDMKQKLELEIQQLKGSLSVLKHIEDDEDAEVLNKVDALHKDLREKEQSLQDIDELNQTLIVKERRSNTELQEARKELIDYIKETSSRGHIKVKRMGELDTGPFLEAMKKRYNEEEAEERASELCSLWAEYLKDPDWHPFRVVIIEGKEKEIIKDDDEKLNGLKNEIGEGAYKAVMTALTEINDYNPSGRYITSELWNYKEGRRATLKEGAQVLLKHWEVVKSKRGMM* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0529 639 Pfam XH domain 505 635 IPR005379 -
Lja6g0529 639 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 49 639 - -
Lja6g0529 639 CDD RRM_like_XS 119 226 IPR005380 GO:0031047
Lja6g0529 639 Coils Coil 447 495 - -
Lja6g0529 639 PANTHER RIBONUCLEASE P SUBUNIT P38 1 49 IPR045177 GO:0080188
Lja6g0529 639 PANTHER RIBONUCLEASE P SUBUNIT P38 49 639 IPR045177 GO:0080188
Lja6g0529 639 Pfam XS domain 116 227 IPR005380 GO:0031047
Lja6g0529 639 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 49 - -
Lja6g0529 639 Coils Coil 328 360 - -
Lja6g0529 639 MobiDBLite consensus disorder prediction 1 24 - -
Lja6g0529 639 Coils Coil 292 319 - -
Lja6g0529 639 Gene3D XS domain 111 282 IPR038588 -
Lja6g0529 639 Pfam XS zinc finger domain 43 86 IPR005381 GO:0031047
Lja6g0529 639 MobiDBLite consensus disorder prediction 94 113 - -
Lja6g0529 639 Coils Coil 391 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0529 Lja-Chr6 12697224 12705270 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0529 - - gmx:102665742 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0529 6 12697224 12705270 Lja6g0526 6 12682094 12684542 PCT