Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0497 ATGAATCTTTCTCGCTTGGAATCTTGTCATGACTCACTTAAAGCATCTAGATTCCCTTTTCTCCCAGAAAAACTTGGTGATTTGGTTATAGTCCTAATACGGATTGGCATACTCATTTGCCTTATAGCATCAGTTTCACTTGCCCTTCACTCAGCATTCTCTAAACAAGACCGGTGGTTCCCTTTACCAGAGCATTTACATGTCTTCCAGAATGATTCAGTCGTTGACAGTGGACCCACAAACATCTCACACATTCTGTTTGGCATTGCTGGTTCAGCCAAGACATGGCATAACCGAAGCAACTACAGTAAGCTATGGTGGGACCCGAACACGAGCCGAGGTTTTGTTTGGCTTGACAAGAAACCTCATCTTTCGCACCTTGACAAGCTAATGCCATATCAAATCTCACAGGGCTGGACTCGTTTCAGGCATGTGCACTCAGCGTCTGCAGTTCGGATAGCGCGGATAGTTTTCGAGAGCTTTAGACTTGGTTTGCCAAATGTTAGATGGTTTGTGATGGGAGATGATGATACAGTATTTTTTCCCGAGAACTTAGTTACGGTGCTGGCAAAATACGATCACAATCAATTGTATTATATTGGTGGGAATTCTGAGAGTGTGGAGCAAGATGTGATGCATTCTTATAACATGGCTTTTGGTGGTGGTGGATTTGCAATCAGTTATGCATTAGCAGCTCAACTAGCCAGAATAATGGATGGTTGTCTTAGCAGATACTACTATTTTTATGGCTCTGATCAGAGGGTCTGGGCCTGTGTTCATGAAATTGGGGTTACTCTTACTAGAGAAAGTGGATTCCACCAGCTTGACATAAGAGGGAACCCATATGGTCTTTTAGCAGCACACCCCATGGCACCTCTTGTATCACTTCATCACCTTGACCAATTGGACTCATTGTTTCCGAACCAAACTCAAACAAATTCATTGGAAAAGCTCTTCATCGCGTACCGCCTTGACCCTGCTCGGATAGTGCAGCAAAGTTTTTGCTATGATCACAGGCGTGAATGGTCAATATCTGTTTCATGGGGCTACACGGTTCAAATCTTCAAAAGTCTGTTGATACCAGCTGATTTGCAGATGCCATTGCAGACATTTCGAACATGGCGAAGTTCTAGTGATGGTCCGTTCACGTTTAATGCTCGACCTATGAGTCACGACCCGTGCCAGCAGCCAGCTGTATTTTTCCTGGATCATGTTGTGAAGGTTGGCTCAAGTGGAAGTATCACAATTTATGAAAGATATGTAGCCGATGAAGCAAAGAAGTGCAAAGGAGCAGATAACACTATAGAAGTGCAGAGAATTAGAGTTTCCGCCTTGACGCTTGACCCAGAATATTGGAAGAATGTACCTCGTAGGCAGTGCTGCCAATTAATGGATGGTGGCAGCATAAAGAATAGCAGTATTCATATCAGAATTAGGAAGTGCAGACCTCAAGAAACAATTACTGCTTAG 1470 0.4361 MNLSRLESCHDSLKASRFPFLPEKLGDLVIVLIRIGILICLIASVSLALHSAFSKQDRWFPLPEHLHVFQNDSVVDSGPTNISHILFGIAGSAKTWHNRSNYSKLWWDPNTSRGFVWLDKKPHLSHLDKLMPYQISQGWTRFRHVHSASAVRIARIVFESFRLGLPNVRWFVMGDDDTVFFPENLVTVLAKYDHNQLYYIGGNSESVEQDVMHSYNMAFGGGGFAISYALAAQLARIMDGCLSRYYYFYGSDQRVWACVHEIGVTLTRESGFHQLDIRGNPYGLLAAHPMAPLVSLHHLDQLDSLFPNQTQTNSLEKLFIAYRLDPARIVQQSFCYDHRREWSISVSWGYTVQIFKSLLIPADLQMPLQTFRTWRSSSDGPFTFNARPMSHDPCQQPAVFFLDHVVKVGSSGSITIYERYVADEAKKCKGADNTIEVQRIRVSALTLDPEYWKNVPRRQCCQLMDGGSIKNSSIHIRIRKCRPQETITA* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0497 489 PANTHER FRINGE-RELATED 10 487 - -
Lja6g0497 489 Gene3D - 75 337 - -
Lja6g0497 489 Pfam Protein of unknown function, DUF604 209 461 IPR006740 -
Lja6g0497 489 PANTHER BNAA05G27650D PROTEIN 10 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0497 Lja-Chr6 12009974 12014925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0497 10 487 Glycosyltransferase AT3G11420 54.418 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0497 - - gmx:100802549 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0497 6 12009974 12014925 Lja6g0497 6 12009974 12014925 ECH
Lja1g2175 1 25256537 25259886 Lja6g0497 6 12009974 12014925 ECH