Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2175 ATGTCTTCTTCCGCCGCAGAACCGATTCGACACCTTCTCCAGAAGCCATGGAAAACCCTCCTCTTCCCCACCATCAAACCCTCCGATCTCCTCTCTCTCTTCCTCAAAGCGGGTCTCGCCATTTCCACCTTCTTCCTCATCTCCCATCTCTTCTTCCTTTCTATCTCCTACCCCCCACACCACAACCCAATTAAAACCTACCAAAGCATACTCCAACACCGCTCCACCACCGCAGCAGGCGAGGAGGAACAGGAACCCACCAACATCTCCCACATCTTTTTTGGGATCGGCGGCTCCGCCAACACATGGAACACGCGCCGCTACTACACTGAGCTCTGGTGGCGCCCGGGGGCCACCAGAGGCTTCGTGTGGCTGGACAAAGACCCCCCAGGAAATGAGACGTGGCCGGAGACCTCACCGCCGTACAGGGTCTCTGGCAACACGTCGGAGTTTAAGTACACCTGCTCGTACGGTTCGCGGTCGGCGATTCGCATAGCGCGCATAGTGAAGGAGAGTTTCGAGCTAGGGTTAGAAAATGTGAGATGGTTCGTGATGGGTGATGATGACACCGTTTTCTTCATCGATAATCTCATCACTGTGCTGTCGAAATATGATCACAATCAAATGTACTACATTGGTGGGAATTCTGAGAGCGTGGAACAGGATTTAGTCCATTTTTACACCATGGCTTATGGTGGTGGAGGCTTCGCCATAAGCTACCCTTTGGCGGCGGAGTTGGTCAAGATTTTGGATGGCTGCATTGATCGATATGCGGAGTATTATGGGTCTGATCAGAAAATTCAGGCTTGTATAAGTGAGATTGGTGTTCAGATTACCAAAGAGCTTGGTTTTCATCAGGTTGATATACGTGGCAACCCGTATGGGTTACTGGCAGCGCACCCCGTAGCACCATTGGTAACATTACACCACCTGGACTACGTGGACCCCATCTTCCCAAGCATGACCCAAGTCAACTCCGTGAAGAAACTCATCTCAGCCTACGATTCGGATCCGGGTCGGACCTTACAGCACAGTTTCTGCTACGACCTTCGCCGGAACTGGTCGGTTTCTGTGTCATGGGGCTACAGCATTGAGCTCTACCCTTTCCTCCTTACGGCGAAGGAGCTTGAAACAAAGGTGGGTACATTCAGAACGTGGCGGAGTTGGAGTGACGGTCCGTTTACATTCAATACCCGACCCGTAAGTGATGACCTGTGTTGGAAGGCTCTTGTGTATTTCATGGATCGCGTTGATGATGTGGGCCCGGGAGAGACCCGATCCGCTTATAGAAGATACGTCGACGTTTCAGGGAAAGAGTGTGAGCGGGTTGAGTATGGGCCGGCTTTAGCTGTTCAATACGTCAACGTTTCAGCGTCCCAATTTTCGCCACACCTCTGGAAACAGTCACCACGCAGACAATGCTGCGAGATAATGAACGGTGCAGATGGACTGAACAGTGTGGTCCAAGTCCAGATCAGAGGGTGTCATCGGTTTGAGAGTGTGACTCCACCGTAG 1515 0.5201 MSSSAAEPIRHLLQKPWKTLLFPTIKPSDLLSLFLKAGLAISTFFLISHLFFLSISYPPHHNPIKTYQSILQHRSTTAAGEEEQEPTNISHIFFGIGGSANTWNTRRYYTELWWRPGATRGFVWLDKDPPGNETWPETSPPYRVSGNTSEFKYTCSYGSRSAIRIARIVKESFELGLENVRWFVMGDDDTVFFIDNLITVLSKYDHNQMYYIGGNSESVEQDLVHFYTMAYGGGGFAISYPLAAELVKILDGCIDRYAEYYGSDQKIQACISEIGVQITKELGFHQVDIRGNPYGLLAAHPVAPLVTLHHLDYVDPIFPSMTQVNSVKKLISAYDSDPGRTLQHSFCYDLRRNWSVSVSWGYSIELYPFLLTAKELETKVGTFRTWRSWSDGPFTFNTRPVSDDLCWKALVYFMDRVDDVGPGETRSAYRRYVDVSGKECERVEYGPALAVQYVNVSASQFSPHLWKQSPRRQCCEIMNGADGLNSVVQVQIRGCHRFESVTPP* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2175 504 Gene3D - 79 349 - -
Lja1g2175 504 PANTHER FRINGE-RELATED 25 501 - -
Lja1g2175 504 PANTHER GLYCOSYLTRANSFERASE 25 501 - -
Lja1g2175 504 Pfam Protein of unknown function, DUF604 221 475 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2175 Lja-Chr1 25256537 25259886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2175 12 503 Glycosyltransferase AT2G37730 60.000 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2175 - - mtr:MTR_7g063090 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2175 1 25256537 25259886 Lja1g2175 1 25256537 25259886 ECH
Lja1g2175 1 25256537 25259886 Lja6g0497 6 12009974 12014925 ECH