Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0394 ATGTCCAATAATCAATCAGATTGGCCTGAGCCAATAATCCGAGTTCAGTCCTTGTCCCAAACCTGCACAGATTCAATCCCTGAAAGGTATATCAAGCCCTCAACAGATAGAGCATCATCCACAACCTCTTTTTCTTCTTTTGATCATGCCAACATCCCAATCATCGACCTTGCAAATTTAAATGGTCCTGACCCAGATGCTAGTTCTTCAATCCTTAAGCAAATCTCTGACGCTTGCCGCGACTGGGGTTTCTTCCAAGTAGTGAACCATGGTGTGAGTCCTGATTTAATGGACAAGGCTAGGGAAACATGGCGAAGGTTCTTTCACATGCCCATGGAGGCGAAGCAGCAATATGCGAATTCTCCAAAAACTTATGAAGGGTATGGAAGCAGGCTTGGAGTTGAGAAAGGTGCTATTCTTGATTGGAGTGATTACTATTATCTACACTACCTTCCCTGTTCACTCAAGGACCATAACAAATGGCCTTCTTTGCCTTTTGGTTGCAGGGAAGTGTTTGATGAGTATGGGAGAGAGTTGGTGAAGCTATGTGGGAGGTTGATGAAGATTCTATCCATAAACTTAGGATTGGAAGAGGAAATTCTGCAAAGTGCTTTTGGGGGTGAAGATATTGGGGCATGCCTAAGGGTGAATTTTTACCCAAAGTGTCCTAAGCCAGAGCTGACTTTGGGTCTTTCATCACACTCAGACCCAGGAGGCATGACTATGCTGCTTCCAGATGACCAAGTCCGTGGCCTTCAAGTGCGCAAAGGGGATGACTGGATTACTGTAAACCCAGCTCGCCATGCGTTCATAGTCAATATTGGTGACCAGATTCAGGTTCTAAGCAATGCAATCTACACGAGTGTGGAGCACAGGGTGATAGTAAATTCAGATAAAGAGAGAGTTTCATTGGCCTTTTTCTACAACCCAAAAAGTGATATACCCATAGAGCCAGTAAAAGAGCTGGTAACACCAGACAAACCTGCACTCTATCCAGCAATGACCTTCGATGAGTACAGGCTGTTCATTAGAATGAGAGGACCTCGTGGTAAATCACAAGTGGAATCTATGAAGTCTCCAAGATAA 1086 0.4438 MSNNQSDWPEPIIRVQSLSQTCTDSIPERYIKPSTDRASSTTSFSSFDHANIPIIDLANLNGPDPDASSSILKQISDACRDWGFFQVVNHGVSPDLMDKARETWRRFFHMPMEAKQQYANSPKTYEGYGSRLGVEKGAILDWSDYYYLHYLPCSLKDHNKWPSLPFGCREVFDEYGRELVKLCGRLMKILSINLGLEEEILQSAFGGEDIGACLRVNFYPKCPKPELTLGLSSHSDPGGMTMLLPDDQVRGLQVRKGDDWITVNPARHAFIVNIGDQIQVLSNAIYTSVEHRVIVNSDKERVSLAFFYNPKSDIPIEPVKELVTPDKPALYPAMTFDEYRLFIRMRGPRGKSQVESMKSPR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0394 361 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 209 310 IPR005123 -
Lja6g0394 361 Gene3D - 11 344 IPR027443 -
Lja6g0394 361 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 358 - -
Lja6g0394 361 Pfam 2OG-Fe(II) oxygenase superfamily 212 310 IPR044861 -
Lja6g0394 361 Pfam non-haem dioxygenase in morphine synthesis N-terminal 52 163 IPR026992 -
Lja6g0394 361 PRINTS Isopenicillin N synthase signature 75 92 - -
Lja6g0394 361 PRINTS Isopenicillin N synthase signature 270 296 - -
Lja6g0394 361 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 9 358 - -
Lja6g0394 361 SUPERFAMILY Clavaminate synthase-like 12 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0394 Lja-Chr6 9809376 9814741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0394 52 358 Glycosyltransferase AT5G59530 33.542 1.09e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0394 - - gmx:100814471 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0394 6 9809376 9814741 Lja1g3383 1 42142686 42146410 ECH
Lja6g0394 6 9809376 9814741 Lja6g0394 6 9809376 9814741 ECH