Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3383 ATGTTGACTTGCCAAGCATGGCCAGAACCTATTGTTCGAGTCCAAACCTTAGCTGAAAGTGGCCTAAGCTCCATACCTGCACGCTACATCAAGCCATGCTCCCAGAGACCCATCAAAACCACCACCACCTTGGCTCCCCACCAAAGTGATGATCATGATCACGTTAACATCCCTGTGATCGACCTTCAGCACCTCTCAGGCGAGGACCGAGTCCTCCGCGAGGAGGCTCTGCGGCGTGTCTCAGAGGCGTGCCGAGAGTGGGGTTTCTTCCAGGTGGTGAACCATGGGGTGAGCCATGAGCTGATGAAGAGTGCTAGAGAGCTGTGGCGTGAGTTCTTCAACCAGCCACTTGAGATGAAGGAGGAGTATGCCAACTCTCCTACCACTTATGAGGGTTATGGAAGTCGTTTGGGAGTGAAGAAAGGTGCCATTTTGGATTGGAGTGACTACTTCTTTCTCCATTACATGCCTCCTTCACTTAGGAACCAATCTAAGTGGCCTGCACTTCCATCATCCTTGAGGAAAGTGATCTCTGAATATAGTGAAGGGGTGGTTAAGCTTGGAGGAAGAATGCTCAATTTGATCTCAATGGATCTTGGCCTGAATGAGGATTACCTTCTTAATGCATTTGGTGGAGAAAATGAGATTGGTGCTTGCCTAAGGGTGAATTTCTACCCAAAATGCCCTCAACCTGACCTCACTCTTGGACTCTCACCTCACTCTGACCCTGGTGGTTTGACCATTCTTCTCCCTGATGATTTTGTTTCTGGCCTTCAAGTTCGCAAAGGAAATTATTGGATCACTGTTAAGCCTGTCCCTAATGCTTTCATCATCAACATTGGTGACCAAATTCAGGTGCTGAGCAACACAATATACAAGAGTGTGGAACACAGGGTGATTGTGAACTCAAACAAAGATCGAGTTTCATTGGCCATGTTTTACAACCCAAAGAGTGATTTGCTTATTGAACCTGCTAAGGAGCTTGTGACAGAGGAGAAGCCAGCACTGTACCCACCAATGACTTATGATGAATACAGACTCTACATTAGGAGACAAGGACCCTGTGGAAAGGCACAAGTTGAATCCTTGGCTTCTCAAACGTGA 1104 0.4746 MLTCQAWPEPIVRVQTLAESGLSSIPARYIKPCSQRPIKTTTTLAPHQSDDHDHVNIPVIDLQHLSGEDRVLREEALRRVSEACREWGFFQVVNHGVSHELMKSARELWREFFNQPLEMKEEYANSPTTYEGYGSRLGVKKGAILDWSDYFFLHYMPPSLRNQSKWPALPSSLRKVISEYSEGVVKLGGRMLNLISMDLGLNEDYLLNAFGGENEIGACLRVNFYPKCPQPDLTLGLSPHSDPGGLTILLPDDFVSGLQVRKGNYWITVKPVPNAFIINIGDQIQVLSNTIYKSVEHRVIVNSNKDRVSLAMFYNPKSDLLIEPAKELVTEEKPALYPPMTYDEYRLYIRRQGPCGKAQVESLASQT* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3383 367 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 361 - -
Lja1g3383 367 SUPERFAMILY Clavaminate synthase-like 11 349 - -
Lja1g3383 367 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 215 316 IPR005123 -
Lja1g3383 367 PRINTS Isopenicillin N synthase signature 276 302 - -
Lja1g3383 367 PRINTS Isopenicillin N synthase signature 80 97 - -
Lja1g3383 367 Pfam 2OG-Fe(II) oxygenase superfamily 218 316 IPR044861 -
Lja1g3383 367 Gene3D - 9 351 IPR027443 -
Lja1g3383 367 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE 3 361 - -
Lja1g3383 367 Pfam non-haem dioxygenase in morphine synthesis N-terminal 57 168 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3383 Lja-Chr1 42142686 42146410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3383 14 363 Glycosyltransferase AT5G59530 32.493 9.41e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3383 - - lja:Lj0g3v0338039.1 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3383 1 42142686 42146410 Lja1g3383 1 42142686 42146410 ECH
Lja6g0394 6 9809376 9814741 Lja1g3383 1 42142686 42146410 ECH