Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0345 ATGGAAGCTTTCAAGACCCTCTTAGCTATGTTACTTCTCTTAGCTTCAGCATTGTGTTCAGCAAATGGCAAAACTCACGAGCATGAGTTTGTTGTTCAAGCAACTAAAGTGAAGAGGTTGTGTAAAACCCACAATGCCATTACCGTGAACGGGCAATTCCCAGGCCCAACGTTGGAAATCAACAATGGAGACACTTTGGTTGTTAAAGTCACCAACAAAGCTCGTTACAATGTGACCATTCACTGGCACGGTGTTCGGCAAATGAGAACAGGATGGGCGGATGGACCATCATTTGTGACCCAGTGTCCCATTCGTCCCGGAGGAAGTTACACTTACCGGTTCAACGTTGAAGGACAAGAAGGCACACTTTGGTGGCATGCACATAGCTCATGGCTAAGAGCCACTGTTTATGGTGCCTTAATCATTCGTCCAAGGGAAGAAGAGTCATTTCCTTTCCCTAAGCCCAAGCGTGAAACGCCCATTCTTTTAGGGGAGTGGTGGGACGCAAACCCCATCGACGTTGTGACGGAGGCGACACGAACTGGGGCTGCTCCAAATGTTTCTGATGCGTACACTATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCTGCCAAAGGCAGTGTCATTGTTCCAATAGCTTCCGGGGAGACCAACCTTCTCCGAGTCATCAACGCTGCACTCAATCAACCTCTCTTCTTCACGATCGCCAACCACAAATTCACAGTGGTTGGCGCTGATGCCTCCTACCTCAAGCCATTTACGACCAAAGTCATTTTGCTAGGACCGGGCCAAACCACCGATGTCTTAATCACCGGTGACCAGCCACCATCCCGCTACTACTTGGCAGCGCGTGCGTACCAATCTGCTCAAAACGCCGGGTTCGACAATACCACTACCACAGCCATTCTTGAATACAGAAACCCACCTCATTCTTCTCCTTCCAAAGTTAAACCCTTGATGCCTCTACTGCCTGCGTATAATGACACCAACATTGTCACTGCCTTCACCAAAAGCCTCAGAAGCCCTAAGAAAGTTGAGGTTCCCACAGAAGTTGATGAGAGCCTCTTCTTAACTGTGGGCCTTGGGCTCAACAAGTGCCCTCCAAGTTTCAGAGCAAGAAGGTGCCAAGGGCCCAATGGGACACGATTCGCTGCGAGCGTCAACAACGTGTCTTTTACACTCCCGAACAACATTTCAATTCTACAAGCTCAGTATCTTGGAATCCCAGGAGTATTCACCACTGATTTCCCGGCGAGGCCGCCGGTGAAGTTTGATTACACCGGTAACGTGAGCCGTTCGCTCTGGCAACCTGTTCCCGGAACTAAAGCGTATAAGATGAAATTTGGATCGAGGGTGCAGGTTGTGTTGCAGGATACAAGCATTGTAACACCTGAGAACCACCCAATTCACCTTCACGGGTATGATTTCTATATCGTTGCTGAGGGGTTTGGAAATTTCGATGCCAAGAAAGATACGTCGAAATTTAACCTTGTTGATCCACCTCTGAGGAACACGGTGGCAGTTCCTGTAAATGGATGGGCAGTTATTCGATTTGTTGCTGATAACCCAGGTGCCTGGCTCATGCATTGTCATTTGGATGTTCACATTACCTGGGGTTTGGCCACAGTTTTCTTGGTGGAGAATGGAGTTGGGAAATTGCAATCCATAGAGCCCCCACCAGCGGATCTGCCTCTTTGTTGA 1704 0.4871 MEAFKTLLAMLLLLASALCSANGKTHEHEFVVQATKVKRLCKTHNAITVNGQFPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPSFVTQCPIRPGGSYTYRFNVEGQEGTLWWHAHSSWLRATVYGALIIRPREEESFPFPKPKRETPILLGEWWDANPIDVVTEATRTGAAPNVSDAYTINGQPGDLYKCSAKGSVIVPIASGETNLLRVINAALNQPLFFTIANHKFTVVGADASYLKPFTTKVILLGPGQTTDVLITGDQPPSRYYLAARAYQSAQNAGFDNTTTTAILEYRNPPHSSPSKVKPLMPLLPAYNDTNIVTAFTKSLRSPKKVEVPTEVDESLFLTVGLGLNKCPPSFRARRCQGPNGTRFAASVNNVSFTLPNNISILQAQYLGIPGVFTTDFPARPPVKFDYTGNVSRSLWQPVPGTKAYKMKFGSRVQVVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDAKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHITWGLATVFLVENGVGKLQSIEPPPADLPLC* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0345 567 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Lja6g0345 567 SUPERFAMILY Cupredoxins 21 171 IPR008972 -
Lja6g0345 567 Gene3D - 371 567 IPR008972 -
Lja6g0345 567 PANTHER MULTI-COPPER OXIDASE 6 567 IPR045087 -
Lja6g0345 567 CDD CuRO_2_LCC_plant 160 306 IPR034285 -
Lja6g0345 567 CDD CuRO_3_LCC_plant 412 550 IPR034289 GO:0005507
Lja6g0345 567 PANTHER LACCASE 6 567 - -
Lja6g0345 567 SUPERFAMILY Cupredoxins 348 567 IPR008972 -
Lja6g0345 567 Pfam Multicopper oxidase 158 308 IPR001117 -
Lja6g0345 567 Pfam Multicopper oxidase 32 146 IPR011707 GO:0005507
Lja6g0345 567 ProSitePatterns Multicopper oxidases signature 2. 530 541 IPR002355 GO:0005507
Lja6g0345 567 Pfam Multicopper oxidase 417 549 IPR011706 GO:0005507|GO:0016491
Lja6g0345 567 TIGRFAM laccase: laccase 24 567 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lja6g0345 567 Gene3D - 14 144 IPR008972 -
Lja6g0345 567 SUPERFAMILY Cupredoxins 152 343 IPR008972 -
Lja6g0345 567 ProSitePatterns Multicopper oxidases signature 1. 525 545 IPR033138 -
Lja6g0345 567 Gene3D - 156 346 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0345 Lja-Chr6 8830978 8835077 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0345 K05909 - gmx:547704 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0345 6 8830978 8835077 Lja6g0345 6 8830978 8835077 ECH
Lja6g1029 6 24057502 24072854 Lja6g0345 6 8830978 8835077 ECH
Lja6g0345 6 8830978 8835077 Lja6g0345 6 8830978 8835077 PCT