Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0295 ATGGCCAACATGCTACATAACGCTTCCATCTCTAGAATCCCCTTAGGAAATCAATGCCCCAATATTGTTGATTCTGTTTCACGTTGTTGCGCTTTTCCATCCATCTCCTCTGATCTTCCTGTTATTAGATCATTGCAGAAGGGAAAACATGTTGAGCTGAGGAAAACAATTGTGTTGGCAAAGAGTAACAAGTTTGATGACACAGAAGAAGTTGATGTTTCTTTGAGCCCGAGAGTTAATGCTGTGAAACCTTCCAAGACAGTCGCCATAAGTGACCATGCCACTGCTCTTTTACAAGCTGGAGTTCCTGTTATTCGCTTAGCAGCTGGAGAACCTGATTTTGATACACCGCCTGTTATAGCTGAGGCTGGGATGAATGCAATTCGTGAAGGTTACACGAGATACACCCCCAATGCTGGAACATTAGAACTACGCCAAGCAATTTGTCATAAGCTAAAAGAGGAGAATGGAATTACATATACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAGCAGAGTGTTATTCAAGCAGTGCTTGCAGTTTGCTCCCCAGGAGATGAGGTCATTATTCCAGCTCCATTCTATGTGAGTTACCCAGAAATGGCAAGATTGGCTGATGCAACTCCTGTGATTCTTCCGACCAACATATCCAAAAATTTTCTTTTGGATCCAAAACTCCTTGAATCCAACCTTACTGAAAGATCTAGACTTCTTATTCTTTGTTCTCCATCTAACCCAACAGGATCTGTGTACCCTAAGACATTACTTGAAGAGATAGCCCAAATTGTAGCAAAGCACCCTAGGCTTCTGGTTCTTTGTGACGAAATTTACGAGCACATAATCTATGCACCGGCAACTCATACAAGCTTTGCATCTTTACCAGGCATGTGGGACAGAACTCTAACTGTAAATGGATTTTCTAAGACATTTGCAATGACAGGTTGGCGGCTTGGGTATGTTGCAGGACCAAAACATTTCATTACAGCATGTGGAAAGATTCAAAGTCAGTTCACATCTGGAGCAAGTAGCATATCTCAAAAAGCTGCTGTTGCTGCATTAGGACTAGGCTATGCAGGGGGAGAGGTTGTTTCTTCCATGGTGAAAGCATTCAGGGAAAGAAGGGATTTTTTGATTAGAAGTTTTGGAGAAATGGAAGGGGTGAAAATATCAGAACCACAGGGAGCATTTTATCTGTTCATTGATTTCAGCTCATATTATGGAAGAGAAGCGGAAGGGTTTGGTACAATTGAGAATTCTGACTCGCTCTGTAGATACTTGCTGGACAAGGGCCTGGTTGCCGTGGTGCCGGGGAGTGCATTTGGAGATGATTCTTGCATCCGCATCTCTTATGCAGCATCACTTCCTACTTTAGAGGCAGCCTTAGAGAGAATTAAGAAAGCACTTTTCCCTCTAACCTCTGCTTAG 1428 0.4293 MANMLHNASISRIPLGNQCPNIVDSVSRCCAFPSISSDLPVIRSLQKGKHVELRKTIVLAKSNKFDDTEEVDVSLSPRVNAVKPSKTVAISDHATALLQAGVPVIRLAAGEPDFDTPPVIAEAGMNAIREGYTRYTPNAGTLELRQAICHKLKEENGITYTPDQVVVSNGAKQSVIQAVLAVCSPGDEVIIPAPFYVSYPEMARLADATPVILPTNISKNFLLDPKLLESNLTERSRLLILCSPSNPTGSVYPKTLLEEIAQIVAKHPRLLVLCDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKTFAMTGWRLGYVAGPKHFITACGKIQSQFTSGASSISQKAAVAALGLGYAGGEVVSSMVKAFRERRDFLIRSFGEMEGVKISEPQGAFYLFIDFSSYYGREAEGFGTIENSDSLCRYLLDKGLVAVVPGSAFGDDSCIRISYAASLPTLEAALERIKKALFPLTSA* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0295 475 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 67 470 - -
Lja6g0295 475 Pfam Aminotransferase class I and II 103 465 IPR004839 GO:0009058|GO:0030170
Lja6g0295 475 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 306 319 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lja6g0295 475 CDD AAT_like 105 467 - -
Lja6g0295 475 Gene3D Aspartate Aminotransferase, domain 1 88 463 IPR015422 GO:0003824
Lja6g0295 475 Gene3D - 134 356 IPR015421 GO:0003824
Lja6g0295 475 PANTHER GLUTAMATE-OXALOACETATE TRANSAMINASE5 67 470 - -
Lja6g0295 475 SUPERFAMILY PLP-dependent transferases 75 469 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0295 Lja-Chr6 7334855 7338805 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0295 K15849 - gmx:100780254 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0697 4 5750144 5753938 Lja6g0295 6 7334855 7338805 PCT