Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0697 ATGGCCAACACGCTGTACAACGCCACCACATGCCGAATCCCTATCGGCGGCGACCACCAATGTCTCGCCGTAAATCGCAACGTCTCCAGATCCCTCTCCTTCTGCTCAAACCTTACCACGCTTCCTCTCAAAGCAATGGAGTTTAACGCGGGGAATCATTCAGGGGCAATAACGGTGGTGAAGGCTGCGAAATCCGATTTTGATGAAAGGGGCATTGACATTTCATTGAGCCCACGAGTCAACGCTGTGAAGCCGTCCAAGACCGTCGCCATCAGCGACCAAGCCACCGCTCTCGTCGAAGCTGGCGTTCCCGTGATTCGATTGGCGGCTGGAGAGCCTGATTTTGACACACCTGCTGTCGTAGCTGAGGCTGGGATCAATGCAATTCGTGAAGGGTACACGAGGTACACCCCGAATGCCGGAACGTTAGAGCTACGTCAAGCAATTTGTCATAAGCTGAAGGAGGAGAATGGGATTACTTATACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAGCAGAGTATTGCTCAGGCAGTGCTTGCAGTTTGCTCTCCAGGAGATGAGGTCATAATTCCAGCTCCTTTCTGGGTTAGTTACCCAGAAATGGCAAGGATGGCTGATGCAACACCTGTGATTCTTCCAACCTCAATATCTGATAATTTCCTATTGGATCCCAAACGCCTTGAATCCATAATTACTGAGAAATCAAGACTGCTTATTTTTTGTTCACCATCAAACCCAACAGGATCCGTCTACCCCAAGAAATTACTTGAAGAGATAGCCCAGATTGTAGCAAAGTACCCAAGGCTTCTGGTTATCTCTGATGAAATTTATGAAAACATCATCTATGCACCAGCAACACATACTAGCTTTGCAGCTCTACCAGGAATGTGGGACAGAACACTAACTGTGAATGGATTTTCTAAGTCCTTTGCAATGACTGGTTGGCGGCTTGGATACATCGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATACAAAGTCAGTTCACTTCAGGAGCCAGTAGCATTTCGCAGAAAGCTGCTGTTGCTGCATTAGGACTAGGCTATGCTGGCGGCGAGGCTGTTTCTACCATGGTGAAAGCATTTAGGGAGCGAAGGGATTTCTTGGTTAAAAGTTTTGGAGAGATCGAAGGTGTTAAAATATCAGAACCCCAGGGAGCATTCTATCTATTCATTGATTTCAGCTTCTGCTATGGAAGAGAAGCTGAAGGATTTGGCAAAATTGAGGATTCTGAATCCCTCTGTCGATATCTGCTGGATAAAGGCCAGGTAGCACTGGTGCCCGGAAGTGCTTTCGGAGATGATACTTGTGTTCGCATCTCTTATGCAGCATCCCTTACTACCCTACAGGCTGCTGTAGAGAGGATTAAGAAAGCTCTTATCCCTCTAAGCTCAGCTGCACTTGTTTAA 1440 0.4722 MANTLYNATTCRIPIGGDHQCLAVNRNVSRSLSFCSNLTTLPLKAMEFNAGNHSGAITVVKAAKSDFDERGIDISLSPRVNAVKPSKTVAISDQATALVEAGVPVIRLAAGEPDFDTPAVVAEAGINAIREGYTRYTPNAGTLELRQAICHKLKEENGITYTPDQVVVSNGAKQSIAQAVLAVCSPGDEVIIPAPFWVSYPEMARMADATPVILPTSISDNFLLDPKRLESIITEKSRLLIFCSPSNPTGSVYPKKLLEEIAQIVAKYPRLLVISDEIYENIIYAPATHTSFAALPGMWDRTLTVNGFSKSFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLVKSFGEIEGVKISEPQGAFYLFIDFSFCYGREAEGFGKIEDSESLCRYLLDKGQVALVPGSAFGDDTCVRISYAASLTTLQAAVERIKKALIPLSSAALV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0697 479 CDD AAT_like 106 468 - -
Lja4g0697 479 Pfam Aminotransferase class I and II 104 466 IPR004839 GO:0009058|GO:0030170
Lja4g0697 479 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 39 474 - -
Lja4g0697 479 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 307 320 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lja4g0697 479 SUPERFAMILY PLP-dependent transferases 76 470 IPR015424 -
Lja4g0697 479 Gene3D - 135 357 IPR015421 GO:0003824
Lja4g0697 479 PANTHER GLUTAMATE-OXALOACETATE TRANSAMINASE5 39 474 - -
Lja4g0697 479 Gene3D Aspartate Aminotransferase, domain 1 89 464 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0697 Lja-Chr4 5750144 5753938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0697 K15849 - gmx:100776446 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0697 4 5750144 5753938 Lja4g0697 4 5750144 5753938 ECH
Lja4g0697 4 5750144 5753938 Lja6g0295 6 7334855 7338805 PCT