LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g0245	ATGGGTGGAGGAAAAGGAAAAGACCCTACCTGCTCCACTTTGGCTATTCAAAACCCTGCTTTCGATCACTATTACAAGGAACAGAACATCGTGTCCCCAGAAGAATGGGATTCATTCATGCAAGTTCTCACTACTCCATTGCCCGCAGCATTTAGAATCAATTCCTGCAGCCGGTCTTCCGCAGATGTCCGGTCTCAACTGGAGAATGACTTTGTACAGTCTCTTCAGGCCAAGGTTGTTGAAGAGGATAGTCATACAGAGGCACTTAAACCGTTGCCATGGTATCCTGATAATCTTGCTTGGCATTCAAATTTTTCCCGTATGCAGCTCAGGAAGAATCGAACACTTCGAAGGTTTCATGAATTCTTAAAGCTAGAAAATGAACTTGGGAATATTACGAGACAGGAAGCTGTCAGCATGGTGCCTCCTATGTTCTTGGATGTACATTCAAATCATTTTGTTCTTGATATGTGTGCGGCACCAGGTTCAAAAACATTTCAATTGCTTGAGATTTTACACCAATCATCTAAAGCTGGATCACTTCCTGATGGAATGGTTATAGCTAATGATCTAGATGTCCAGAGATGTAATCTTCTCATATACCAAACAAAAAGAATGTGCACAGCCAACCTAATCGTCACTAATCATGAAGCTCAGCATTTCCCAGGATGTCATTTAAACATGCATGATGGTACAATGGAGGCTGATGAACATATCACCCAACTGTTATTTGATCGTATTCTGTGTGATGTACCATGCAGTGGAGACGGTACATTTCGTAAGGCACCTAAGCTCTTGAATAAATGGAACACAGGGACAGGAAATGGGCTTCATAACCTACAAATCATTATTGCCATGCGAGGTGTATCCTTACTTAAAGTTGGTGGAAGAATGGTTTACTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTCGTTGCAGAGGTTTTGCGGAGGTGTAGAGGGTCTCTGGAACTTGTTGATGTCTCTAGTGAACTTCCACAACTTGTTCGTCGACCAGGTCTTAAGAGATGGAAGGTATTTGACAAGGGCATGTCATATGTCTCTTGCAAAGATGTTCCCAAGTTTCGTAGAAGTATAGTTCTTCCCAGCATGTTTCCGAATGGTGGAAGCTACCAAGATGTTGTTAAAAGTAACAGTAACTGTAATATCAGCATTGGAGATGAAATTGCTGATGATGTTAATGGAAATTCTGATGATGGTGTTCAAGAAGCGGAGAATCCCGTGATGCACGATATCACTGAGGTTTCTGCTTTGCCACTAGACCGATGTGTGAGGTTAGTGCCTCATGATCAGAACACTGGAGCATTTTTTATTGCTGTATTGCAAAAGGTTTCTCCTCTGCCAGTGATTCAGGTAAAAACTAGAAAAGACGCTGATAATCGACATGTAGATTCAGCAGACCAGGGAAATGAGGATGCACAAGTATTGCAGATCAATCCATCAGAAAGTACACATGAAAATGTTTCAGAGACTAATACAAATGACAATGAACCCGATTCAGCAGATTTGAAAGTTACTCCTGTTATATGTGAAGATGGGGATTCCAACGAAGCCCAAGAGCCCCTCAATGTAGAAAATATAGCAAAGATCACTCCAGGAAAAAGAAAGCTGCAGATGCAAGACAGATGGAGAGGCATTGACCCTGTTGTCTTCTTCAAAGATGAAGTAGTTATTAACAGCATTAAGGCATTTTACGGGATTGACGAGCAGTTCCCATTCGATGGTCACCTTGTAGCAAGAAATGGTGATACTAGCCGTGTCAAAAGGATCTACTATGTCTCCAAGTCAGTCAAGAATGTTCTTGAGTTGAACTTCTCTGTTGGGCAGCAATTTAAAATAGCTTCCGTTGGCCTAAAGATTTTTGAAAGACACACATCACGTGAAGGTGCCTCTGCACCATGTCCTTTCCGGATCACTTCTGAAGGATTGCCCCTTATCCTCCCTCACGTCACCAAACAGATTCTGCGTGCATCTCCTATAGATTTCGAGCATCTTCTGCAGTATAAGACTGTAAAATTTGCAGATTTTGTTAATGCCAAGTTTGGTGAAAGGGTTGCAAACCTAATGCCAGGCTGTTGTTTGGTAGTTCTAGGTGAAGGGAACATAGCTGCTCCAGAGCCCCTCCAAGTGGATGAGTCAACAATAGGCATTGGCTGTTGGAAGGGGATGGCAAGTTTGACCGTGATGGTCACTGCAATAGAGTGCCAAGAACTGCTTGAAAGGCTTTTAATTCGTGCAAACACTAACAGAATAGGACTCCTCATGCATGAGGACCAACCCTCTCATAATGTGGGAGATGAAGAACAGCAGTCGAATGCAAAACACGAAGATGTGGAAGCTGCTTGGTGA	2376	0.4263	MGGGKGKDPTCSTLAIQNPAFDHYYKEQNIVSPEEWDSFMQVLTTPLPAAFRINSCSRSSADVRSQLENDFVQSLQAKVVEEDSHTEALKPLPWYPDNLAWHSNFSRMQLRKNRTLRRFHEFLKLENELGNITRQEAVSMVPPMFLDVHSNHFVLDMCAAPGSKTFQLLEILHQSSKAGSLPDGMVIANDLDVQRCNLLIYQTKRMCTANLIVTNHEAQHFPGCHLNMHDGTMEADEHITQLLFDRILCDVPCSGDGTFRKAPKLLNKWNTGTGNGLHNLQIIIAMRGVSLLKVGGRMVYSTCSMNPIENEAVVAEVLRRCRGSLELVDVSSELPQLVRRPGLKRWKVFDKGMSYVSCKDVPKFRRSIVLPSMFPNGGSYQDVVKSNSNCNISIGDEIADDVNGNSDDGVQEAENPVMHDITEVSALPLDRCVRLVPHDQNTGAFFIAVLQKVSPLPVIQVKTRKDADNRHVDSADQGNEDAQVLQINPSESTHENVSETNTNDNEPDSADLKVTPVICEDGDSNEAQEPLNVENIAKITPGKRKLQMQDRWRGIDPVVFFKDEVVINSIKAFYGIDEQFPFDGHLVARNGDTSRVKRIYYVSKSVKNVLELNFSVGQQFKIASVGLKIFERHTSREGASAPCPFRITSEGLPLILPHVTKQILRASPIDFEHLLQYKTVKFADFVNAKFGERVANLMPGCCLVVLGEGNIAAPEPLQVDESTIGIGCWKGMASLTVMVTAIECQELLERLLIRANTNRIGLLMHEDQPSHNVGDEEQQSNAKHEDVEAAW*	792

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g0245	791	PANTHER	TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED	11	757	-	-
	Lja6g0245	791	ProSitePatterns	NOL1/NOP2/sun family signature.	244	255	IPR018314	GO:0003723\|GO:0008168
	Lja6g0245	791	MobiDBLite	consensus disorder prediction	464	511	-	-
	Lja6g0245	791	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	39	453	IPR001678	GO:0008168
	Lja6g0245	791	Gene3D	Vaccinia Virus protein VP39	14	452	IPR029063	-
	Lja6g0245	791	MobiDBLite	consensus disorder prediction	769	791	-	-
	Lja6g0245	791	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	101	122	IPR023270	GO:0016428
	Lja6g0245	791	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	620	632	IPR023270	GO:0016428
	Lja6g0245	791	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	329	348	IPR023270	GO:0016428
	Lja6g0245	791	PRINTS	RNA (C5-cytosine) methyltransferase signature	295	311	IPR023267	GO:0001510
	Lja6g0245	791	PRINTS	RNA (C5-cytosine) methyltransferase signature	435	452	IPR023267	GO:0001510
	Lja6g0245	791	PRINTS	RNA (C5-cytosine) methyltransferase signature	155	165	IPR023267	GO:0001510
	Lja6g0245	791	PRINTS	RNA (C5-cytosine) methyltransferase signature	245	257	IPR023267	GO:0001510
	Lja6g0245	791	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	25	453	IPR029063	-
	Lja6g0245	791	MobiDBLite	consensus disorder prediction	479	509	-	-
	Lja6g0245	791	MobiDBLite	consensus disorder prediction	767	791	-	-
	Lja6g0245	791	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	11	757	IPR023267	GO:0001510
	Lja6g0245	791	Pfam	16S rRNA methyltransferase RsmB/F	144	329	IPR001678	GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g0245	Lja-Chr6	5233443	5241638	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g0245	K15334		-	gmx:100808598	1172.15

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g0748	4	6131848	6138441	Lja6g0245	6	5233443	5241638	PCT