Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0748 ATGGGCAGAGGAGGAAGGTCACGCACGCAGAGAAAGCATTTCCGCCAGAACAGAGAGAACGAGTGGAAGCGTTCCAAATCGGATCCCAACGCTTCCGAAACCCAAACTACACCATGGACTCCCTTCGCCACTGCGAACCCTTCCTTCGATGCCTACTACAAGGAGCAAGCTGTGGTGGCTCCCGATGAGTGGGATCAATTCGTCGCGTTTCTCAGAACTCCCTTGCCTGCTTCCTTCAGAATCAACTCCAGTAGCCTGTTTGCTGACGACCTTCGCTCGCAACTGGAGAATGATTTCGTGCATTCTCTTCGTGCTGTGGTTCCTGAAGGGGTTGAGACTGAGGCTATTCGGCCATTGCCGTGGTATCCGGGGAACTTCGCTTGGCATTCGAATTTTTCTCGGATGCAGCTCAGGAAGAACCAAACACTTGAGAAGTTCCATGAATTTTTAAAGCTAGAAAATGAAATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTATTCTTAGATGTGCATCCAGACCATTTTGTACTTGATATGTGTGCCGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCAACTAAAGCAGGATCACTACCTGATGGAATGGTTATAGCAAACGATCTTGATGTACAAAGATGTAATCTTCTCATCCACCAAACGAAAAGAATGTGCACAGCCAACCTAATTGTTACCAATCACGAAGCGCAGAACTTCCCAGGATGCCGTTTAAATAGAAATCATGAACAGATGGAGTTAGATCACCATATTAACCAACTACTATTTGATCGTGTTCTGTGTGATGTTCCATGTAGTGGAGATGGTACACTTCGTAAGGCACCTGATTTGTGGAGGAAATGGAACTCTGGGATGGGACATGGGCTTCATAGCCTACAAGTTCTAATTGCTATGCGAGGTTTATCTTTACTCAAAATTGGTGGAAGAATGGTTTATTCAACGTGCTCAATGAATCCTATTGAGAATGAAGCGGTGGTTGCAGAGGTTTTGCGTAGGTGTGGAGGATCTGTGAAACTTGTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGCCGGCCAGGTCTCAAGAAATGGAAGGTGTATGACAAGAGCACTTGGTTTGTCTCTTACAAAGATGTTCCTAAGTTTCGTGGAGGTGCAATTCTTCCCGGTATGTTTCCCTCTGGGAGACTTGATAACAGTAATCGTAATGTTGACATGGGAGACATTGCTAATGGTGCTAATGGAAATGCTGAAGATTGTATTCAAGCTGTTGAGAATCCAGTGATGCCTGAGTCTGTTGAGGAAGTTTCTGATTTACCTCTAGAACATTGCATGAGGATAGTGCCGCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTTCTGCAAAAAGTTTCCCCTCTTCCAGCCATTCAAGAAAAGCCTAAAATAGACGTTGGTGGGAAATGTGCAGAACCAGCAAACCACAGTCTTCAGGATGCACAAGTACTGCAGATTAACTCATCAGAATGTGCAGATGAAGAAATCCTCGAAGAAGCTTCAGAGGAAAATGTAAATGACAATGAACCTGATACAGAAGATTTGGAAGTTAGTCCTGTTCCAAATGAAGAGGACTCTAAGGAAACTGAAGAGCCCCATAATGTACAAAATGTGGAAAAGAAGATTCCAGGCATAAGAAAGTTGCAGATTCAAGGGAAATGGAGAGGTGTTGACCCTGTCGTCTTTTTCAAGGATGAAGCAATTATTAGTAGTATAAGGGATTTTTACGGAATCGATGAGAAATTTCCATTCAGTGGCCACCTTGTTACAAGAAACGATGATACAAGTCATGTGAAAAGAATTTACTACATCTCCAAGTCAGTCAAGGATGTTCTTCAGTTGAATTTATCAGTTGGGCAGCAACTTAAAATTACCTCAGTTGGCCTGAAGATGTTTGAAAGACAAACAGCAAGACAAGGCAGCGATGCACCATGTGCTTTCCGAATATCATCTGAAGGGCTGCCCCTTATTCTCCCATACATCACCAAACAAATTCTACAGGCATCACCTGCAGATTTCAAGCGTATTCTGCAGGACAAAGATGTAAAATTTGATGATTTTGCTGATGCTGAATTTGGCAAAAATGTGGCAAACCTATTGCCAGGCTGTTGTGTGTTAACTCTGGCTAAAGGGAACGAAGTTGCTACAGAGTCCCTCAAAGTGGATGAGTCAACAATAGCCATTGGATGCTGGAGGGGTAAGACGAGATTGACTGTGATGGTTACTGCCATGGATTGTCAAGAACTGCTTGAAAGGCTTTTAATACGTCTAGACACAGAAAATGGCTCCAACGGGCATGTAGACAAATCCTCTATTAATGCGAGTGAAGTACAGCCTTTACCGGAGTTGAACGGTGGAAATGAGGATGATGTAAAAGCTACTGTAAGCTAA 2457 0.4351 MGRGGRSRTQRKHFRQNRENEWKRSKSDPNASETQTTPWTPFATANPSFDAYYKEQAVVAPDEWDQFVAFLRTPLPASFRINSSSLFADDLRSQLENDFVHSLRAVVPEGVETEAIRPLPWYPGNFAWHSNFSRMQLRKNQTLEKFHEFLKLENEIGNITRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLNRNHEQMELDHHINQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNSGMGHGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVKLVDVSSELPQLIRRPGLKKWKVYDKSTWFVSYKDVPKFRGGAILPGMFPSGRLDNSNRNVDMGDIANGANGNAEDCIQAVENPVMPESVEEVSDLPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPAIQEKPKIDVGGKCAEPANHSLQDAQVLQINSSECADEEILEEASEENVNDNEPDTEDLEVSPVPNEEDSKETEEPHNVQNVEKKIPGIRKLQIQGKWRGVDPVVFFKDEAIISSIRDFYGIDEKFPFSGHLVTRNDDTSHVKRIYYISKSVKDVLQLNLSVGQQLKITSVGLKMFERQTARQGSDAPCAFRISSEGLPLILPYITKQILQASPADFKRILQDKDVKFDDFADAEFGKNVANLLPGCCVLTLAKGNEVATESLKVDESTIAIGCWRGKTRLTVMVTAMDCQELLERLLIRLDTENGSNGHVDKSSINASEVQPLPELNGGNEDDVKATVS* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0748 818 ProSitePatterns NOL1/NOP2/sun family signature. 271 282 IPR018314 GO:0003723|GO:0008168
Lja4g0748 818 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 128 149 IPR023270 GO:0016428
Lja4g0748 818 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 356 375 IPR023270 GO:0016428
Lja4g0748 818 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 644 656 IPR023270 GO:0016428
Lja4g0748 818 Pfam 16S rRNA methyltransferase RsmB/F 172 356 IPR001678 GO:0008168
Lja4g0748 818 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 67 474 IPR001678 GO:0008168
Lja4g0748 818 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 3 785 IPR023267 GO:0001510
Lja4g0748 818 MobiDBLite consensus disorder prediction 787 818 - -
Lja4g0748 818 MobiDBLite consensus disorder prediction 542 559 - -
Lja4g0748 818 PRINTS RNA (C5-cytosine) methyltransferase signature 272 284 IPR023267 GO:0001510
Lja4g0748 818 PRINTS RNA (C5-cytosine) methyltransferase signature 456 473 IPR023267 GO:0001510
Lja4g0748 818 PRINTS RNA (C5-cytosine) methyltransferase signature 322 338 IPR023267 GO:0001510
Lja4g0748 818 PRINTS RNA (C5-cytosine) methyltransferase signature 182 192 IPR023267 GO:0001510
Lja4g0748 818 MobiDBLite consensus disorder prediction 1 41 - -
Lja4g0748 818 Gene3D Vaccinia Virus protein VP39 44 393 IPR029063 -
Lja4g0748 818 MobiDBLite consensus disorder prediction 518 560 - -
Lja4g0748 818 MobiDBLite consensus disorder prediction 787 802 - -
Lja4g0748 818 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 3 785 - -
Lja4g0748 818 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 474 IPR029063 -
Lja4g0748 818 MobiDBLite consensus disorder prediction 14 28 - -
Lja4g0748 818 MobiDBLite consensus disorder prediction 518 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0748 Lja-Chr4 6131848 6138441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0748 K15334 - gmx:100808859 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0748 4 6131848 6138441 Lja6g0245 6 5233443 5241638 PCT