Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0214 ATGAAGTACTGTTTCTCCTTATCCTCAACTCTCCCTCTCTGCATTCTCCTCACTCTCTGTTTTCACAGTCTGTGTTATTTCAGTGTGTCATCTAAAAATGTATCTGAGAGTGACCTACAGCAAGCTACCATCCCACCAAGAGGTTGGAATTCCTACGATTCCTTTTGCTGGACAATTTCCGAAGAAGAATTCTTGCAGAATGCCGAAATAGTTTCTCAACGTCTCCATGATCATGGATACGAGTATGCTGTGGTGGATTATCTATGGTATAGAAGGAAAGTCAAGGGTGCTCATCATGATTCTCTTGGGTTTGATGTGATTGATGAATGGGGGAGGATGATTCCTGACCCTGGAAGGTGGCCTTCTTCCATAGAAGGGAAAGGGTTCAGCGCAGTAGCTGATCGAGTACATAGCATGGGTTTGAAGTTTGGTATTCATGTTATGAGAGGGATAAGCACACAAGCAGTCAATGCAAACACCCCTATCCTTGATACAACAACGGGAGCTGCTTATCAAGAATCTGGTCGAGTGTGGCGTGCAAAAGACATAGCAATTCCGGAAAGGGCTTGTGGATGGATGTCTCATGGTTTCATGAGTGTGAATACGCAGTTCGGAGCTGGGAAAGCTTTTCTGAGGTCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGTGAAGCATGACTGTGTATTTGGCGATGACTTGGATTTAAATGAAATAAGTTATGTATCTGAGGTTCTCAGGGAGCTAGGTCGCCCCATCGTATATTCTTTGTCTCCTGGAACGAGTGTGACACCAGCCATGGCCAAGGATATTAGTGGACTGGTCAATATGTACCGTATAACAGCGGATGACTGGGATAATTGGGGAGATGTCAAAACTCATTTTGATGTAACAAGGGATTTTTCAACTGCTAATATGATAGGAGCTAAAGGTTTAATGGGGAACTCCTGGCCAGATTTGGACATGCTACCCTTTGGATGGCTAACTGATCCAGGCTCAAATGAAGGTCCACATAGATACACTAATCTCAATCTACAAGAGCAGAGGACACAGATGACCCTGTGGTCTATGGCAAAGACTCCCCTTATGTATGGGGGGGATGTACGGAAGATTGACTCGACGACGTATGATCTTATCACAAATCCTACCCTTCTGGAGATTAATTCTTTTAGCTCGAATAATATGGAGTTACCTTATATCACAATCCTGAAGAGTGAAGATCAGGATCTTGGAAGGCAAATGAGAAGAAGCTACAGAGAGAAGGAAACGTCATACAAATATTCATTAGGCCTCACTAGCTGTTCGGAGTCAAAGGCTAGTGGTTGGACCAGTGAAAGTTATAACGGATATCTTGAAAGAATCTGCTGGAAAAGGAGTTTCAAAAACAAGCATCTTGCCCCTTTCTGTGTTCAAAAGAGAGAACTTAACTTGACCTTCAAAAAGGAGAGTATGTATCACGAGGATCGTCAACGTGGACATCATTTAGTTGCAGCCAACCGGATAAAGTTTTGCTTGGATGCTTCTCCAAGACGAAAGCTTAGTTCTCTAGAGTTTAGGAGATGTACATTTTCTCCCTGCAGATTGGATTCAAATCAGATGTGGGAGTTGAATCCTAATGGGACCCTGGTAAATAGTTATTCTGGCTTATGTGCAACTATGGAGTCTGTCAAAGCTACTATTACTTCTGGGGGTTTTCGCTCTTGGATCGCTACAGGAAGAGCAGGAAAAGTCTATGTTGCTTTCTTCAATCTAAGTGAACAAAAGGCAGTGATGTCTGTGCAGACATCAGACCTGGCTAAGGTTCTTCCAGGCAAAGACTTCAGTTCTTGCAAGGGCAGTGAAATATGGAGTGGAAGTGACACAGTAATAATGCAGGGGACGTTATCAACGGCAGTGGAAGTGCACGGAAGTGCACTATTTGTTTTAAATTGTGACTAG 1944 0.4336 MKYCFSLSSTLPLCILLTLCFHSLCYFSVSSKNVSESDLQQATIPPRGWNSYDSFCWTISEEEFLQNAEIVSQRLHDHGYEYAVVDYLWYRRKVKGAHHDSLGFDVIDEWGRMIPDPGRWPSSIEGKGFSAVADRVHSMGLKFGIHVMRGISTQAVNANTPILDTTTGAAYQESGRVWRAKDIAIPERACGWMSHGFMSVNTQFGAGKAFLRSLYEQYAAWGVDFVKHDCVFGDDLDLNEISYVSEVLRELGRPIVYSLSPGTSVTPAMAKDISGLVNMYRITADDWDNWGDVKTHFDVTRDFSTANMIGAKGLMGNSWPDLDMLPFGWLTDPGSNEGPHRYTNLNLQEQRTQMTLWSMAKTPLMYGGDVRKIDSTTYDLITNPTLLEINSFSSNNMELPYITILKSEDQDLGRQMRRSYREKETSYKYSLGLTSCSESKASGWTSESYNGYLERICWKRSFKNKHLAPFCVQKRELNLTFKKESMYHEDRQRGHHLVAANRIKFCLDASPRRKLSSLEFRRCTFSPCRLDSNQMWELNPNGTLVNSYSGLCATMESVKATITSGGFRSWIATGRAGKVYVAFFNLSEQKAVMSVQTSDLAKVLPGKDFSSCKGSEIWSGSDTVIMQGTLSTAVEVHGSALFVLNCD* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0214 647 Pfam Alpha galactosidase A 210 390 IPR002241 GO:0004553|GO:0005975
Lja6g0214 647 Gene3D Aldolase class I 23 392 IPR013785 -
Lja6g0214 647 SUPERFAMILY (Trans)glycosidases 42 390 IPR017853 -
Lja6g0214 647 Gene3D - 559 646 IPR013780 -
Lja6g0214 647 SUPERFAMILY Ricin B-like lectins 504 557 IPR035992 -
Lja6g0214 647 CDD RICIN 504 552 IPR000772 -
Lja6g0214 647 ProSiteProfiles Lectin domain of ricin B chain profile. 506 554 - -
Lja6g0214 647 PANTHER ALPHA-GALACTOSIDASE 17 644 - -
Lja6g0214 647 PRINTS Glycosyl hydrolase family 27 signature 39 58 IPR002241 GO:0004553|GO:0005975
Lja6g0214 647 PRINTS Glycosyl hydrolase family 27 signature 133 154 IPR002241 GO:0004553|GO:0005975
Lja6g0214 647 PRINTS Glycosyl hydrolase family 27 signature 348 369 IPR002241 GO:0004553|GO:0005975
Lja6g0214 647 Pfam Alpha galactosidase C-terminal beta sandwich domain 566 644 IPR041233 -
Lja6g0214 647 CDD GH27 45 390 IPR002241 GO:0004553|GO:0005975
Lja6g0214 647 SUPERFAMILY Glycosyl hydrolase domain 562 645 - -
Lja6g0214 647 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 17 644 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0214 Lja-Chr6 4276483 4282118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0214 23 476 Glycoside Hydrolase AT3G26380 65.939 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0214 - - gmx:100777954 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0772 4 6429164 6434744 Lja6g0214 6 4276483 4282118 PCT