Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0772 ATGCCACATCTGCATTCAATTGTACCAGAAGCAATAATGAAGTGTTTCACTCTGTCTCTGTGTTTACTCTCTTTCTGGATTCTCCTTGTTCTTTGTTTTCAGAGTGTGTCATCTCAAAATTTATACCAGAGTGCCCTACAGCAAGCTAGCGTCCCACCAAGAGGGTGGAATTCTTATGATTCCTTTTGCTGGACAATTTCTGAAGCAGAATTCTTGCAGAGTGCTGCAATAGTTTCTCAACGTCTCCGTCCTCATGGATATGAGTTTGTTGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCCCGGGTGCTAGCGTTGATTCTCTTGGATTCGACGTGATTGATAAATGGGGAAGGATGCTTCCTGACCCAGGAAGGTGGCCTTCTTCCGTAGGTGGGAAGGGGTTCCGTGAAGTAGCTAATAAAGTGCACAGTTTGGGTTTGAAGTTCGGGATTCATGTTATGAGAGGTATAAGCACACAAGCCGTCAATGCAAACACCCCTATCCTAGATACAACAAAGGGAGGTGCTTATCAAGAAGACGGGCGAGTATGGTATGCAAAAGACATAGCAATGCCAGAGAGGGCTTGTGTGTGGATGCATAATGGTTTCATGAGTGTAAATACAAAGTTGGGAGCAGGGAGAGCTTTTTTGAGGTCCCTTTATGAGCAGTATAATGCTTGGGGTGTTGATTTTGTGAAACATGACTGTGTGTTTGGAGCCGATTTGGATTTAAGTGAAATAACGTATGTATCAGAGCTTCTCAGGGAGTTTAATCGCCCCGTAGTGTATTCTCTGTCTCCTGGGAGCAATGTCCATCCAGCCATAGCCAAGAAGGTCATTGGACTAGTAAACATGTATCGTATAACAGGAGATGACTGGGATCAATGGAAGGATGTCAAGACTCATTTTGATGTAACAAGCGAGTTTTCTGCGGCTAATATGATTGGCGGAGGAAAAGGTTTGAAGGGTAGTTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGGTTCAAATGACGGTCCACACAGGTTTAGTAATCTCAATCTAGAAGAAAAAAGGACACAGATGACTTTGTGGGCTTTGGCAAAGTCTCCACTTATGTTTGGAGGGGATGTGCGGAAGATTGATCCCCCGACATACGAAATTATCACGAATCCTACCCTGCTTGAGATTAATTATTTCAGCTCAAATAATATGGAGTTTCCTTATGTCACAAGTCCAAAGAATTTGAAGCATGGACATCAGCATCCTGAAGAAAAAGAGAGAAGATCTAAGAAAGGAATGAAAACATATACACATTCATTAGGCCTCACTGGCTGCAGTGAATCAACGGCAAGTGGTTGGTCTAGCGAAAGTCTTAACCAAAATCTTAAAAGAATCTGTTGGAAAAGGAGTTTAGAAAACAAGCCGCAGTCCCTTTTCTGTGTACACAAGAAGGAACTTCAGTTCAGATTAGATGGAGAGAGTACGCATCAAGAGAACTATCGAGGGAAACATCAATTAGTTGCAACCGACCGAATGAGATTTTGCTTGGATGGTTCTCCGAAACGAAAGGTTACTTCTAAAGAGTTCAAGAGAGGTACTTTTTCTCCTTGCAGATGGGATTCAAATCAGATCTGGGAGCTAAACCCCAATGGTACCCTGGTAAATAGTTACTCTGGTCTCTGTGCAACAGTAGAGGATGTCAAAGCTGATACTAAACCGGGTGGGGTTCGCTCATGGGTTGCAACTGGAAGAAAAGGAGAAATCTATTTGGCTTTCTTCAATCTGAGTGAACAGAAAACGGTGATACATGCACAGACATCATATCTGGCCAAGGCTATTCCTGGCAGACGCTTTAGGTCTTGTCGGGGAAAGGAAGTGTGGAGTGGCAAGGACGTTGTAACCCCGCAGGGGAATTTAGCAATGAACGTGGAAACTCATGGATGTGCACTATTTGTTCTGCATTGCAATTAG 1974 0.4352 MPHLHSIVPEAIMKCFTLSLCLLSFWILLVLCFQSVSSQNLYQSALQQASVPPRGWNSYDSFCWTISEAEFLQSAAIVSQRLRPHGYEFVVVDYLWYRKKVPGASVDSLGFDVIDKWGRMLPDPGRWPSSVGGKGFREVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGGAYQEDGRVWYAKDIAMPERACVWMHNGFMSVNTKLGAGRAFLRSLYEQYNAWGVDFVKHDCVFGADLDLSEITYVSELLREFNRPVVYSLSPGSNVHPAIAKKVIGLVNMYRITGDDWDQWKDVKTHFDVTSEFSAANMIGGGKGLKGSSWPDLDMLPFGWLTDPGSNDGPHRFSNLNLEEKRTQMTLWALAKSPLMFGGDVRKIDPPTYEIITNPTLLEINYFSSNNMEFPYVTSPKNLKHGHQHPEEKERRSKKGMKTYTHSLGLTGCSESTASGWSSESLNQNLKRICWKRSLENKPQSLFCVHKKELQFRLDGESTHQENYRGKHQLVATDRMRFCLDGSPKRKVTSKEFKRGTFSPCRWDSNQIWELNPNGTLVNSYSGLCATVEDVKADTKPGGVRSWVATGRKGEIYLAFFNLSEQKTVIHAQTSYLAKAIPGRRFRSCRGKEVWSGKDVVTPQGNLAMNVETHGCALFVLHCN* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0772 657 SUPERFAMILY (Trans)glycosidases 49 398 IPR017853 -
Lja4g0772 657 CDD GH27 52 398 IPR002241 GO:0004553|GO:0005975
Lja4g0772 657 PRINTS Glycosyl hydrolase family 27 signature 140 161 IPR002241 GO:0004553|GO:0005975
Lja4g0772 657 PRINTS Glycosyl hydrolase family 27 signature 356 377 IPR002241 GO:0004553|GO:0005975
Lja4g0772 657 PRINTS Glycosyl hydrolase family 27 signature 46 65 IPR002241 GO:0004553|GO:0005975
Lja4g0772 657 Pfam Alpha galactosidase C-terminal beta sandwich domain 575 654 IPR041233 -
Lja4g0772 657 Pfam Alpha galactosidase A 223 398 IPR002241 GO:0004553|GO:0005975
Lja4g0772 657 PANTHER ALPHA-GALACTOSIDASE 18 654 - -
Lja4g0772 657 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 18 654 IPR002241 GO:0004553|GO:0005975
Lja4g0772 657 MobiDBLite consensus disorder prediction 412 432 - -
Lja4g0772 657 Gene3D Aldolase class I 43 401 IPR013785 -
Lja4g0772 657 CDD RICIN 541 574 IPR000772 -
Lja4g0772 657 SUPERFAMILY Glycosyl hydrolase domain 573 655 - -
Lja4g0772 657 Gene3D - 570 656 IPR013780 -
Lja4g0772 657 MobiDBLite consensus disorder prediction 417 432 - -
Lja4g0772 657 SUPERFAMILY Ricin B-like lectins 512 572 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0772 Lja-Chr4 6429164 6434744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0772 25 486 Glycoside Hydrolase AT3G26380 63.948 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0772 - - gmx:100783705 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0772 4 6429164 6434744 Lja4g0772 4 6429164 6434744 ECH
Lja4g0772 4 6429164 6434744 Lja6g0214 6 4276483 4282118 PCT