Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3020 ATGGCTGATTCAACGTCAAGCGATTCTGTCTCGGTAGACATGGATTCCCTCTCTCCTTCACCCAAGGAGCACATCATCAGAACACGTCATGGTTCTGTCTCTGTTGCAGTGTATGGAGACCAGGACAAACCAGCTCTTATCACTTATCCTGATCTGGCTTTAAATTATGTCTCCTGCTTTCAGGGTTTATTATTTTGTCCTGAAGCATATTGCCTGCTGCTTCACAATTTTTGTATATATCACATTAGTCCACCTGGGCATGAGTTGGGAGCTGCTTCAATTGATCCAGAGTGTCCTATTCTTTCTGTAGATGACTTAGCTGATCAAATAGCTGAGGTTCTTAATATTTTTGGTCTTAGTTCTGTCATGTGTATGGGAGTAACTGCTGGGGCTTATATTCTTACCTTATTTGCTATGAAGTATAGACAACGTGTTCTTGGATTGATACTTGTTTCTCCTCTTTGTAAAGAACCATCGTGGTCTGAATGGCTGTATAGCAAGGTCATGTCAAATTTATTATACTTTTATGGCATGTGTGGGGTGGTGAAGGAAATATTGCTGAAGCGATATTTTAGCAAGGAAATTCGAGGTGGTACTCATTTACCAGAATCAGATGTAGTTAAAGCATGCCGAAGGTCATTGGATGAGAGGCAGAGTCAGAATGTGTGGCGGTTCCTTGAAGCTATTAATGGGAGACATGACATAAGTGAAGGCCTGAGAAAATTACATTGCCGTTCACTAATTTTTGTTGGGGATACTTCTCCATTTCACTCGGAGGCTCTCCATATCACTTCAAAGTTAGACAGAAGATTCAGTGCCCTAGTTGAGGTTCAAGAATGTGGGTCAATGGTAACAGAGGAGCAACCCCATGCTATGTTAATACCAATAGAGTACTTTCTCATGGGATATGGCTTGTACAGGTCATCCAAGATGAGTGTCAGCCCTAGAAGCCCCTTGAGTCCGTCTTGCATTTCCCCTGAGCTTTATTCACCAGAGAGTATGGGTTTGAAATTGAAACCAATAAAGACAAGAATTTCTATGGAAATTTAG 1050 0.4152 MADSTSSDSVSVDMDSLSPSPKEHIIRTRHGSVSVAVYGDQDKPALITYPDLALNYVSCFQGLLFCPEAYCLLLHNFCIYHISPPGHELGAASIDPECPILSVDDLADQIAEVLNIFGLSSVMCMGVTAGAYILTLFAMKYRQRVLGLILVSPLCKEPSWSEWLYSKVMSNLLYFYGMCGVVKEILLKRYFSKEIRGGTHLPESDVVKACRRSLDERQSQNVWRFLEAINGRHDISEGLRKLHCRSLIFVGDTSPFHSEALHITSKLDRRFSALVEVQECGSMVTEEQPHAMLIPIEYFLMGYGLYRSSKMSVSPRSPLSPSCISPELYSPESMGLKLKPIKTRISMEI* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3020 349 Pfam Ndr family 23 307 IPR004142 -
Lja5g3020 349 SUPERFAMILY alpha/beta-Hydrolases 25 300 IPR029058 -
Lja5g3020 349 Gene3D alpha/beta hydrolase 17 302 IPR029058 -
Lja5g3020 349 PANTHER PROTEIN NDL2 5 349 - -
Lja5g3020 349 MobiDBLite consensus disorder prediction 1 16 - -
Lja5g3020 349 PANTHER N-MYC DOWNSTREAM REGULATED 5 349 IPR004142 -
Lja5g3020 349 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3020 Lja-Chr5 59158198 59162868 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3020 - - gmx:100815084 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3020 5 59158198 59162868 Lja5g3020 5 59158198 59162868 ECH
Lja1g4044 1 51235203 51238407 Lja5g3020 5 59158198 59162868 ECH
Lja5g3020 5 59158198 59162868 Lja1g4044 1 51235203 51238407 PCT